Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq105237 163 4e-35 seq77412 154 2e-32 seq53184 145 1e-29 seq47011 132 8e-26 seq184144 104 4e-17 seq1971 95.1 2e-14 >seq105237 Length=11214 Score = 163 bits (180), Expect = 4e-35 Identities = 163/209 (78%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || |||||||||| || || || || || || |||| || |||| || | Sbjct 8884 TGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCATCA- 8942 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| ||| |||||| || ||||||||| |||||||| |||||| Sbjct 8943 GATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGATCAA 9002 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | |||||||||||||| ||||||||||| ||| ||||| || | ||||| ||| Sbjct 9003 CAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTACAAT 9062 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| || ||||| | ||||| || Sbjct 9063 ATCCAAAAGGAGTCGACATTACATTTGGT 9091 >seq77412 Length=2780 Score = 154 bits (170), Expect = 2e-32 Identities = 161/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| ||||||| ||||| || || ||||| ||| |||| ||||||| || | Sbjct 342 TGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA- 284 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| ||| ||||| ||| |||||||| |||||||| |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| ||||||||||| || ||| | | || ||| | ||||| || Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||||||||| || | ||||| || Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGT 135 >seq53184 Length=5087 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || ||||| || |||||||| || | || || |||| || Sbjct 4877 TGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCCG 4818 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||||||| ||||| ||| ||||||||| |||||||| ||||||| Sbjct 4817 ATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAAC 4758 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| | | || || | ||||| || | Sbjct 4757 AACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAACA 4698 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | || || ||| | || || | || |||| Sbjct 4697 TCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGGTA 4650 Score = 131 bits (144), Expect = 3e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || ||||| || |||||||| || | || || |||| | Sbjct 4649 TGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCTG 4590 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||||| ||| ||||||||| |||||||| || |||| Sbjct 4589 ATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAAC 4530 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || ||||| |||| ||| ||||| | | || || |||| Sbjct 4529 AACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAATA 4470 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAAT 146266 | |||||||| || || | |||||||||||||| | | || || ||||||| Sbjct 4469 TTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGGCCAATAAAT 4415 Score = 120 bits (132), Expect = 5e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 146052 TTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAA 146111 ||||| || || ||||||||| | || ||||||| ||| || ||| |||| |||||| Sbjct 5085 TTAACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAA 5026 Query 146112 AATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGT 146171 || || ||| ||||||||| || ||||| ||||||||| | | || ||||| ||| Sbjct 5025 GCCAAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGT 4966 Query 146172 AAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATC 146231 |||||||| || ||| | | || ||| | || || || || ||||| ||||| || | Sbjct 4965 AAACAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTT 4906 Query 146232 CATTTAGTA 146240 ||||| ||| Sbjct 4905 CATTTGGTA 4897 >seq47011 Length=3271 Score = 132 bits (146), Expect = 8e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||||||| | || ||||| || || || |||| || || | || Sbjct 1686 TGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCCG 1627 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| || |||||| ||| |||||||| |||||||| ||||||| Sbjct 1626 ATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAAC 1567 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || ||||||||||| || ||| | || || | ||||| |||| Sbjct 1566 AACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAATA 1507 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || | |||||||| Sbjct 1506 TCCAAAAGGAATCCACACTTCATTTAGT 1479 >seq184144 Length=1006 Score = 104 bits (114), Expect = 4e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || |||||||||||||||||||| | | ||||||| || Sbjct 270 TGCAGATCTTTGTAAACACTGTAACAGGAAAAACAATTACTCTAGCAGTAGAACCATCCG 329 Query 146092 ATACTATTCAAAAT-GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||| | ||||||| | ||||| || || ||| || || | |||| ||| |||||| Sbjct 330 ATACCA-TCAAAATAATCAAAAACAAGATTCAAGAAAAGCAAAGAATTCTACCGGATCAA 388 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||| | || |||||||||||||||||| | || ||| Sbjct 389 CAACGCCTTATTTTTGCAGGTAAACAACTTGAAGAT 424 >seq1971 Length=4725 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 146053 TAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT-GTAAAA 146111 ||||||||||||| |||||| | | ||||||| |||| | | ||||||| | ||| Sbjct 550 TAACAGGAAAAACTATTACTCTAGCAGTAGAACCATCCGATTCCA-TCAAAATAATCAAA 608 Query 146112 AATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGT 146171 || || || ||| || || | |||| ||| ||||| ||| | || |||||||||||| Sbjct 609 AACAAGATTCAAGAGAAGCAAAGAATTCTACCAGATCAGCAACGCCTTATTTTTGCAGGT 668 Query 146172 AAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATC 146231 |||||| | || ||| | ||| | | || ||||| || | | | |||| ||| | Sbjct 669 AAACAACTTGAAGATGAACAAACAATTTCCGACTATAACATTCGATCAAAATCAACTTTT 728 Query 146232 CATTTAGTATTACG 146245 ||||| | |||||| Sbjct 729 CATTTGGCATTACG 742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784330072522880