Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq77412 174 1e-38 seq47011 138 9e-28 seq105237 127 2e-24 seq53184 113 3e-20 >seq77412 Length=2780 Score = 174 bits (192), Expect = 1e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||||||||||||||| ||||| | | || ||| Sbjct 128 ACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACC 187 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || ||| | || || | ||| ||||| || ||||| || ||||| Sbjct 188 ATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTT 247 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||| ||||||| |||| | ||||| || |||||||||||||||| || Sbjct 248 GTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGAT 307 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||||||||| || || || ||||| Sbjct 308 TGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 105 bits (116), Expect = 5e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| |||||||| ||||||||||| ||||| | | || ||| Sbjct 356 ACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGATAATGTACGACC 415 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| |||||||| | || | | ||| ||||| || ||||| || || || Sbjct 416 ATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCCTT 475 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 |||||| | ||| ||||||| | || | || || || |||| ||||| Sbjct 476 GTCTTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCCACTTC 526 >seq47011 Length=3271 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| |||||||| |||||||| ||||| || || ||||||| | ||| || Sbjct 1472 ACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCC 1531 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | || || | ||| ||||| || ||||| || ||||| Sbjct 1532 ATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTT 1591 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| |||||| |||| | ||| || || | || || ||||| ||||| Sbjct 1592 GTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTAT 1651 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||||| ||||| || ||||| Sbjct 1652 GGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq105237 Length=11214 Score = 127 bits (140), Expect = 2e-24 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| ||||||||||| | || || || ||||| || || ||||| | |||| || | Sbjct 9098 ACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAAT-GTTCTGC 9040 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||||||||| ||| | || | | ||| ||||| || |||||||| |||| Sbjct 9039 CATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTT 8980 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | || || |||||| | ||||||| |||| | || || || |||| || ||||| || Sbjct 8979 TATCCTG-AATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTG 8921 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || ||||| ||||| || |||||||| Sbjct 8920 ATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq53184 Length=5087 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||| ||||| ||||| || || | | || ||| Sbjct 4891 ACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACC 4950 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| |||||| | || || | ||| ||||| || || || || ||||| Sbjct 4951 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTT 5010 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || ||| || |||| | ||||| || |||||||||| | ||| || Sbjct 5011 ATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAAT 5070 Query 29751 AGTTTTGCCAGTTAAGG 29767 || || || ||||||| Sbjct 5071 TGTCTTACCGGTTAAGG 5087 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || |||||||| || || ||||||||||| || || || | || || || ||| || Sbjct 4442 ACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTCT 4501 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || |||||||| || | || || | ||| || || || ||||| || ||||| ||||| Sbjct 4502 AGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGG 4561 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| ||||||| | || | || ||||| |||| || || | || || ||||| Sbjct 4562 ATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTTA 4621 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || ||||| Sbjct 4622 CCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384341899867824