Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq46618 86.0 8e-12 seq90443 82.4 1e-10 >seq46618 Length=8955 Score = 86.0 bits (94), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 50415 AATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTT 50474 |||||||||| | ||| | |||||||||||||||||||||| ||||| |||||| | Sbjct 3668 AATGAATTTAAGTTGTACTTCACCATATAATGCTGATTTTGATGGAGATGAGATGAATCT 3727 Query 50475 ACATGTTCCTCAATCATATGGA 50496 ||||||||| |||||| ||||| Sbjct 3728 ACATGTTCCACAATCA-ATGGA 3748 >seq90443 Length=2238 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 115177 AAAAATGGTATTGAAGTAGGAGCAGGTGTTGTCGATGAAGATTATCGAGATAATTTAATG 115236 |||||| |||||| || ||||| |||||||| |||||||| ||||| | |||||| Sbjct 1708 AAAAATTTTATTGATGTTGGAGCTGGTGTTGTAGATGAAGACTATCGTGGAAATTTAGGT 1649 Query 115237 GTTATTTTACATAACCATTCAGATGTTGATTTT 115269 ||| |||| |||||||||||| |||||||| Sbjct 1648 GTTGTTTTGTTTAACCATTCAGACATTGATTTT 1616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627063076823040