Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq77412 172 5e-38 seq105237 125 7e-24 seq53184 120 3e-22 seq47011 107 2e-18 >seq77412 Length=2780 Score = 172 bits (190), Expect = 5e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| ||||||| ||||||||||||||| |||||||||||| Sbjct 117 CCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAT 176 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| | ||||||||| ||| |||| | |||||| ||||| || || Sbjct 177 AATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 236 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| |||||| ||| | | ||| | ||||||| ||||||||| Sbjct 237 ATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACT 296 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | ||||| ||||| || ||||||||||| ||||||||| Sbjct 297 TCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCATA 344 >seq105237 Length=11214 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||| || || ||||| || |||||||| | Sbjct 9109 CCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGAC 9050 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| || ||| | || |||||||| ||||| || || Sbjct 9049 AATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGA 8990 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||| | | ||| | || |||| ||||| || Sbjct 8989 ATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACC 8930 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| |||||||||||||| || |||||||| Sbjct 8929 TCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq53184 Length=5087 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||||| ||||||||| ||||| |||||||| ||| Sbjct 4880 CCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGAT 4939 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| | ||||||||||||| |||| | |||||| ||||| || ||| Sbjct 4940 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGT 4999 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || || || ||||| | ||| | ||||| | ||||||||| Sbjct 5000 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACT 5059 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAA 137390 || | ||| | ||||| ||||| || Sbjct 5060 TCCAAAGTAATTGTCTTACCGGTTAA 5085 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | || || |||| ||| ||||| ||||| ||||||||||| | Sbjct 4652 CCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGAC 4711 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| | ||||||||||||| |||| | |||||| ||||| || || Sbjct 4712 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 4771 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||||| | || | || || | ||||| || Sbjct 4772 ATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACC 4831 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || || || || || || |||||||| ||||||||| Sbjct 4832 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 4879 >seq47011 Length=3271 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | |||||||||| ||| ||||| ||||| || |||||||| | Sbjct 1461 CCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGAC 1520 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||| | |||||||||||| | || | |||||| ||||| || || Sbjct 1521 AAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGA 1580 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| || | | ||| | || || | || || || Sbjct 1581 ATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACC 1640 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || || | ||||||||| || |||||||| Sbjct 1641 TCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487402858924800