Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq77412 174 3e-38 seq53184 170 4e-37 seq105237 163 6e-35 seq98090 149 1e-30 seq47011 131 3e-25 seq15552 109 1e-18 seq184144 102 2e-16 >seq77412 Length=2780 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || || || ||||||||||| || || || ||||| | Sbjct 115 TACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGG 174 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||| | |||||| || |||||||||| | |||||||||||| | Sbjct 175 ATAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTG 234 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||| || |||||||| ||||||||||| || || ||||||| Sbjct 235 GAATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTA 294 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| || || || || ||||| || || ||||| Sbjct 295 CTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 131 bits (144), Expect = 3e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || || ||||| || || || || ||||| | Sbjct 343 TACCACCACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGG 402 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||||| ||| || ||||| || || || | |||||||||||| | Sbjct 403 ATAATGTACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTG 462 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| || || ||||| ||||| ||||| ||||| ||||| | Sbjct 463 GAATTCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCCA 522 Query 82762 CTTCCAA 82768 ||||||| Sbjct 523 CTTCCAA 529 Score = 104 bits (114), Expect = 5e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 |||| || ||||||||||| ||||| || || ||||| ||||| ||||| ||||| | Sbjct 1 CTGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATG 60 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| |||||||| || || ||||| || || || || |||||||| |||||||| Sbjct 61 GTTCCACTTCCAAGGTAATTGTCTTACCGGTTAAGGTTTTTACAAAGATCTGCAT 115 >seq53184 Length=5087 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || ||||| || || || || ||||| | Sbjct 4650 TACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCG 4709 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||||| |||||| ||||||||||||| | |||||||||||| | Sbjct 4710 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTG 4769 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| | Sbjct 4770 GAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAA 4829 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || || || || || || |||||||| || || ||||| Sbjct 4830 CCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 168 bits (186), Expect = 1e-36 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || |||||||| || || || || || || | Sbjct 4878 TACCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGG 4937 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||| | |||||| ||||||||||||| | |||||||||||| | Sbjct 4938 ATAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTG 4997 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 |||||||||| |||||||| ||||| |||||||| |||||||| || || ||||||| Sbjct 4998 GTATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTA 5057 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 |||||||||| || ||||| || || || Sbjct 5058 CTTCCAAAGTAATTGTCTTACCGGTTAA 5085 >seq105237 Length=11214 Score = 163 bits (180), Expect = 6e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| || | | ||| || || || || | || || || || || ||||| |||| Sbjct 9114 ACATACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAAT 9055 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| | |||| || ||||||| |||||| || ||||| || || | ||||||||||| Sbjct 9054 CAGACAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTG 8995 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || ||||| ||||| ||||| || ||||| ||||||||||| ||||| |||| Sbjct 8994 GTGGAATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTT 8935 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || | || || |||||||| ||||| || |||||||| || |||||| Sbjct 8934 CGACCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATT 8882 >seq98090 Length=13235 Score = 149 bits (164), Expect = 1e-30 Identities = 381/573 (66%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 198057 AATTTATCTCCATGGTTACATTTTGGTCATGTATCTCCACAACGCGTTGCCT--TAGAAG 198114 |||||||| |||||||| ||||||||||| | || || |||||| | ||| | Sbjct 10585 AATTTATCGCCATGGTTTCATTTTGGTCAAATCTCAGTTCA--GCGTTGTGTACTAGTCG 10642 Query 198115 TATTAAAATGTATACGAGAAAACaaaaaaaaCGTTGAAACGTTTATAGATGAAATAATTA 198174 || ||| | | | | || || | | | |||| | |||| || ||| ||| Sbjct 10643 TACAAAAGTTCAAAACAAAATACGCAGATAGTGTTGCAGTGTTTTGTGAGGAAGCCATTG 10702 Query 198175 TAAGAAGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGT-ACAG 198233 || | | ||| | || ||||| ||||| ||||| ||| |||| || |||||| | | || Sbjct 10703 TACGGCGCGAATTATCTGATAACTTTTGCTACTACAATGAACACTATGATAGCCTTAGAG 10762 Query 198234 TCTACTCACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTAT 198293 | ||| | ||||| | ||| ||| | ||||| | || ||| || | ||| Sbjct 10763 GGTTATCAAAC-TGGGCGGCTACAACTTTAAATGATCATAAAAAGGATAAACGAGAATAT 10821 Query 198294 ATCTATTCTATTAAACAACTCG-AAAAGGCGGAAACACATGACCCTCTATGGAATGCATC 198352 | || | || || | | | |||| | ||| ||||| | ||||||||||| | Sbjct 10822 TTGTACAC-ATCGGACGAGTTGGAAAAATCATTAACGTATGACGATTTATGGAATGCAGC 10880 Query 198353 GCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAA 198412 ||| |||| || | | || || ||||||||| | ||| | ||||||| ||||| || Sbjct 10881 TCAATTACAATTGGTTAATGAGGGGAAAATGCATGGATTTATGCGAATGTATTGGGCGAA 10940 Query 198413 AAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAA 198472 ||| || || |||||||| || || ||||| ||| | | | ||||||| |||| Sbjct 10941 AAAAATCCTCGAATGGACTGAAAGTCCAGAAGAAGCTCTCCGAATTGCTATCTATTTAAA 11000 Query 198473 CAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTAT 198532 || || ||||||| | ||||||||| || || || || ||||||||||| || Sbjct 11001 TGATCGATATAGTTTAGACGGAAGGGATCCTAATGGCTATGTGGGCTGTATGTGGTCAAT 11060 Query 198533 TTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATAT 198592 | | ||| | || |||| || ||| ||| | || || ||||| || ||| | | || Sbjct 11061 TGGTGGAATCCACGATCAAGGATGGGCTGAACGGCCCATTTTTGGTAAAATACGCTTCAT 11120 Query 198593 GAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 ||||||| || | ||| ||| |||||||| Sbjct 11121 GAATTATAGTGGATGTAAACGAAAGTTTGATGT 11153 >seq47011 Length=3271 Score = 131 bits (144), Expect = 3e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || ||||| || || || ||||| || || ||||| ||||| || | | | || Sbjct 1472 ACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCC 1531 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | |||||| ||||| || |||| | |||||||||||| || || ||||| || Sbjct 1532 ATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTT 1591 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || || || |||||||| || ||||| || || || || | ||||| Sbjct 1592 GTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTAT 1651 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 ||||| || || | || |||||||| || ||||| || || Sbjct 1652 GGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCATGATGAT 1693 >seq15552 Length=8850 Score = 109 bits (120), Expect = 1e-18 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 143985 GATCCAGTCTTGCATATAGAACTTAG-GAGATGGGCTGATGTTTTTATTATAGCGCCCTT 144043 ||||| || || ||||| || ||| | || |||||| || | || |||| || || | Sbjct 5885 GATCCTGTATTACATATTGA-CTTGGTGAAATGGGCGGACATAATTGTTATTGCACCACT 5827 Query 144044 AACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTAT 144103 | |||||||| ||||||||||||| |||||||||||||||| |||| | | Sbjct 5826 AGATGCAAATACACTAGCAAAAATAGCTTGTGGTATATGCGATAATCTACTTCTTTGCAC 5767 Query 144104 AGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCTTAT 144163 ||| | || |||||| ||| ||||| | | ||||| || || ||||| || || Sbjct 5766 AGTTCGGGCTTGGGATGTAACCAAACCGTTACTGTTTTGTCCAGCGATGAACACAAAAAT 5707 Query 144164 GTGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACATATGGGTTTCATAGA 144223 |||||||||||| || || | ||| || |||||||| || | ||| | || ||| Sbjct 5706 GTGGGAACATCCAATCACCAAGCCACAAATTGATACTTTGAAGAGTTGGGGATACAAAGA 5647 Query 144224 AATA 144227 |||| Sbjct 5646 AATA 5643 >seq184144 Length=1006 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||||||| || ||||| || || | ||||||||| || | |||| || ||| Sbjct 423 TCTTCAAGTTGTTTACCTGCAAAAATAAGGCGTTGTTGATCCGGTAGAATTCTTTGCTTT 364 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||| | ||| || ||||| ||||||||| | | ||| || Sbjct 363 TCTTGAATCTTGTTTTTGATTATTTTGATGGTATCGGATGGTTCTACTGCTAGAGTAATT 304 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || ||||| | || |||||||| ||||||||| Sbjct 303 GTTTTTCCTGTTACAGTGTTTACAAAGATCTGCATT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979476514226896