Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq98090 145 1e-29 seq15552 104 4e-17 >seq98090 Length=13235 Score = 145 bits (160), Expect = 1e-29 Identities = 380/572 (66%), Gaps = 6/572 (1%) Strand=Plus/Plus Query 182740 AATTTATCTCCGTGGTTACATTTTGGACATGTATCTCCACAACGTGTTGCTTTAGAAGTA 182799 |||||||| || ||||| |||||||| || | || || ||| || ||| ||| Sbjct 10585 AATTTATCGCCATGGTTTCATTTTGGTCAAATCTCAGTTCAGCGTTGTGTACTAGTCGTA 10644 Query 182800 TTAAAATGTATACGAGAAAACaaaaaaaaCGTTGAAACGTTTATAGATGAAATAATTGTA 182859 ||| | | | | || || | | | |||| | |||| || ||| |||||| Sbjct 10645 CAAAAGTTCAAAACAAAATACGCAGATAGTGTTGCAGTGTTTTGTGAGGAAGCCATTGTA 10704 Query 182860 AGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTTC-AGTC 182918 | | ||| |||| ||||| ||||| ||||| ||| |||| || ||||| || || Sbjct 10705 CGGCGCGAATTATCTGATAACTTTTGCTACTACAATGAACACTATGATAGCCTTAGAGGG 10764 Query 182919 TACTCACGCATGGGCTAGAAGAACATTAGAAGATCACGTTAATGATCCTAGAAAGTATAT 182978 | ||| | ||||| | ||| ||| | ||||| || ||| || | ||| | Sbjct 10765 TTATCAAAC-TGGGCGGCTACAACTTTAAATGATCATAAAAAGGATAAACGAGAATATTT 10823 Query 182979 CTATTCTATTAAACAACTCG-AAAAGGCAGAAACACATGACCCTCTATGGAATGCATCAC 183037 || | || || | | | |||| || ||| ||||| | ||||||||||| | | Sbjct 10824 GTACAC-ATCGGACGAGTTGGAAAAATCATTAACGTATGACGATTTATGGAATGCAGCTC 10882 Query 183038 AAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAA 183097 || |||| || | | || || ||||||||| | ||| | |||||||| ||||| |||| Sbjct 10883 AATTACAATTGGTTAATGAGGGGAAAATGCATGGATTTATGCGAATGTATTGGGCGAAAA 10942 Query 183098 AGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACA 183157 | || || |||||||| || ||| ||||| ||| | | | ||||||| | || Sbjct 10943 AAATCCTCGAATGGACTGAAAGTCCAGAAGAAGCTCTCCGAATTGCTATCTATTTAAATG 11002 Query 183158 ATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTT 183217 || || ||||||| | ||||||||| || || || || ||||||||||| ||| Sbjct 11003 ATCGATATAGTTTAGACGGAAGGGATCCTAATGGCTATGTGGGCTGTATGTGGTCAATTG 11062 Query 183218 GCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGA 183277 | ||| | |||||| || ||| ||| | || || ||||| || ||| | | |||| Sbjct 11063 GTGGAATCCACGATCAAGGATGGGCTGAACGGCCCATTTTTGGTAAAATACGCTTCATGA 11122 Query 183278 ATTATGAGAGTTCTAAGAAGAAA-TTTGATGT 183308 ||||| | | ||| | |||| |||||||| Sbjct 11123 ATTATAGTGGATGTAA-ACGAAAGTTTGATGT 11153 >seq15552 Length=8850 Score = 104 bits (114), Expect = 4e-17 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 143004 GATCCCGTCTTGCATATAGAACTTAG-GAGATGGGCGGATGTTTTTCTTATAGCGCCCTT 143062 ||||| || || ||||| || ||| | || ||||||||| | || |||| || || | Sbjct 5885 GATCCTGTATTACATATTGA-CTTGGTGAAATGGGCGGACATAATTGTTATTGCACCACT 5827 Query 143063 AACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTAT 143122 | |||||||| ||||||||||||| ||||||||||||||| |||| | | Sbjct 5826 AGATGCAAATACACTAGCAAAAATAGCTTGTGGTATATGCGATAATCTACTTCTTTGCAC 5767 Query 143123 AGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTAT 143182 ||| | || |||||| ||| ||||| | | |||||||| || ||||| | || Sbjct 5766 AGTTCGGGCTTGGGATGTAACCAAACCGTTACTGTTTTGTCCAGCGATGAACACAAAAAT 5707 Query 143183 GTGGGAACATCCTATTACAGAAAAACATATAGATGCTTTAAAACATATGGGTTTCATAGA 143242 |||||||||||| || || | ||| || ||| |||| || | ||| | || ||| Sbjct 5706 GTGGGAACATCCAATCACCAAGCCACAAATTGATACTTTGAAGAGTTGGGGATACAAAGA 5647 Query 143243 AATA 143246 |||| Sbjct 5646 AATA 5643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901301012119040