Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq146712 239 1e-57 seq46618 114 3e-20 >seq146712 Length=6971 Score = 239 bits (264), Expect = 1e-57 Identities = 426/616 (69%), Gaps = 7/616 (1%) Strand=Plus/Minus Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 || ||| ||| || |||||||||||| | | ||| || ||| | ||||| |||| | Sbjct 4006 GAAGATAGTATCGATGGTATTTATGATACATTGAAACAATGTGCATTAATTTC-AAAATC 3948 Query 110604 T-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | | ||||| || || || | |||||| |||||| |||| ||| || |||| || Sbjct 3947 TGCAGGAGGTATAGGCCTTAATGTTCATTGTATTCGAGCAAAGGGATCATATATTGCGGG 3888 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| ||| | ||| ||||| || |||||||||| | ||| | ||||| Sbjct 3887 TACAAATGGTATTTCTAATGGGCTTGTACCTTTGTTAAGAGTGTACAATAATACTGCTCG 3828 Query 110723 ATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTG 110779 || || ||||||||||||| | | | ||| ||||||| || ||||| |||||||| Sbjct 3827 GTACGTTGATCAAGGTGGTAACAAACGTCCCGGCGCATTTGCCATTTATCTAGAACCTTG 3768 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| ||||| |||||||| | || | |||||| ||| || ||| || Sbjct 3767 GCATGGTGATATTTTTGAATTTCTTGATTTAAAGAAAAATACAGGTAAAGAGGAAGTTAG 3708 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 || || ||| | ||||||||| | ||||| | || ||||| ||||| || ||| ||| Sbjct 3707 GGCCCGAGATATGTTTTATGCACTATGGATACCCGACTTATTTATGAAGCGCGTTGAAGC 3648 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 ||||| |||||| | ||||||||||| | ||||||||| ||| | || Sbjct 3647 AAATGAAGATTGGTCTTTAATGTGTCCTCACGAATGTCCTGGTCTTCACGATTGTTGGGG 3588 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA- 111018 | | || |||||| | || || || |||||||||| |||||| |||| | |||| Sbjct 3587 AGATGAATTTGAAAAACTATATGAGAAATATGAAAGCGAAGGC-CGTTTTCTACGCAAAG 3529 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | ||| ||| || |||| || ||||| ||||||||||||||| ||| | Sbjct 3528 TGAAAGCCCAATCTCTATGGTATGCTATTATTGAAAGTCAAGTTGAAACTGGAGTTCCGT 3469 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 |||| ||||||||||| | |||||| ||||| |||||| ||| | || || |||| Sbjct 3468 ATATGCTGTATAAAGATGCTTGTAATCGAAAATCCAATCAACAAAATATCGGTACCATTA 3409 Query 111139 AGTCTAGTAATTTGTG 111154 | | | |||||||| Sbjct 3408 AATGTTCCAATTTGTG 3393 >seq46618 Length=8955 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| | || |||| | || | ||||| | |||||| | ||||||| ||| Sbjct 3561 AGACATTTAAGAGATGATGACTTAGTCATTTTCAACCGACAACCAACTTTGCATAAGATG 3620 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| ||| ||||| || | | | || || ||| | ||| ||||| Sbjct 3621 AGTATGATGGGACATAGAGTAAAAGTGTTGCCATGGTCCACTTTCCGAATGAATTTAAGT 3680 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||||||||||||||| |||||| | ||||| || ||| Sbjct 3681 TGTACTTCACCATATAATGCTGATTTTGATGGAGATGAGATGAATCTACATGTTCCACAA 3740 Query 305486 TCAAAGGTTACAATGACTGAA 305506 |||| || |||| | ||||| Sbjct 3741 TCAATGGAAACAAGGGCTGAA 3761 Score = 84.2 bits (92), Expect = 5e-11 Identities = 125/177 (71%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 || |||| || |||| ||||| | ||||||||||| | || || | || Sbjct 3131 TTGCAATTCCACGTTGCTACATTTGTAGATAATGAAATACCCGGGATGCCACGTGCTATG 3190 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCA----TTAAAGGTAAAGAGGG 305001 |||| |||||| | ||| ||||| | || ||| || ||||||| ||||| || Sbjct 3191 CAAAAATCTGGTAAACCATTAAAAGC----AGTCAAAGCGCGTCTTAAAGGAAAAGAAGG 3246 Query 305002 TCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAAT 305058 |||||||||||||||||| |||||||| || || |||||| ||| | | |||||| Sbjct 3247 TCGTATTCGAGGTAATCTTATGGGAAAGCGAGTAGATTTTTCTGCTCGTACTGTAAT 3303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183971338728304