Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq77412 141 6e-29 seq105237 118 7e-22 seq53184 114 8e-21 seq47011 96.9 2e-15 >seq77412 Length=2780 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || |||||||| |||||||||||||| Sbjct 116 ACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGA 175 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||||||||| |||||||| || ||||| || |||||| | || Sbjct 176 TAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGG 235 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| || || |||| || | ||||| || ||| | Sbjct 236 AATTCCTTCTTTGTCTTGGATTTT-TGCTTTGACATTTTCAATTGTGTCTGATGGTTCTA 294 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || ||||| ||||| |||||||| || || |||||| Sbjct 295 CTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCATA 344 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || ||| || ||||| |||||||||||||| Sbjct 344 ACCACCACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGA 403 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || ||||| || || || ||||| | ||| || |||||| | || Sbjct 404 TAATGTACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGG 463 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 464 AATTCCTTCCTTGTC 478 >seq105237 Length=11214 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||||| || ||| ||||| || |||||||| || Sbjct 9110 ACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGA 9051 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || || |||||||| || |||||||| | ||| || |||||| | || Sbjct 9050 CAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGG 8991 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | || |||| || | || || || ||| | Sbjct 8990 AATACCTTCTTTATCCTGAATTTT-AGCTTTGACATTTTCAATTGTATCTGATGGTTCGA 8932 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || || |||||||||||||| ||||| Sbjct 8931 CCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq53184 Length=5087 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| || ||||| ||||||||||| || Sbjct 4651 ACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGA 4710 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || |||||||| || ||||| || ||||| || |||||| | || Sbjct 4711 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGG 4770 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || |||||| | || |||| || | ||| ||| | ||| | Sbjct 4771 AATTCCTTCTTTATCTTGAATTTT-GGCTTTTACATTCTCAATGGTATCGGACGGTTCAA 4829 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| ||||| || ||||| || || |||||| Sbjct 4830 CCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 4879 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || || ||||| |||||||| ||||| Sbjct 4879 ACCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGA 4938 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||||||||| || ||||| || ||||| || |||||| | || Sbjct 4939 TAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGG 4998 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || | || || | || | ||||||| || ||| | Sbjct 4999 TATTCCTTCTTTATCTTGGATCTT-GGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTA 5057 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAA 33728 | || | || || || ||||| ||||| Sbjct 5058 CTTCCAAAGTAATTGTCTTACCGGTTAA 5085 >seq47011 Length=3271 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | | ||| | ||| ||||| || ||| || ||||| || |||||||| | Sbjct 1459 CACCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCG 1518 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || || | || ||||||||||| || || ||||| ||||| || |||||| | | Sbjct 1519 ACAAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTG 1578 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||||| | | |||| || | || ||| || || Sbjct 1579 GAATCCCTTCTTTGTCTTGGATTTT-AGCCTTGACATTTTCGATAGTATCGGATGGCTCA 1637 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || || || || | |||||||||||||| ||||| Sbjct 1638 ACCTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327955407866880