Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq77412 109 1e-18 seq53184 89.7 1e-12 >seq77412 Length=2780 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || |||||| | ||||| ||| || |||||| | ||| Sbjct 328 AAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCAGACACAATTGAAAAT 269 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| || ||||| |||||||||||| || || ||| | | ||||| Sbjct 268 GTCAAAGCAAAA-ATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTTTAATCTT 210 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || ||||||||||| | || || ||||||||||| | || ||||| || Sbjct 209 TGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAACATTCAAAAAGAATC 150 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| ||||| | ||| | | ||||| Sbjct 149 TACACTTCATTTGGTTCTTCGTCTTCG 123 >seq53184 Length=5087 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || ||||||||||| ||| || ||||| | ||| ||||| Sbjct 5082 ACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAAGCC 5023 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||||||||| || || ||| | | ||||| || || || Sbjct 5022 AAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTAAA 4963 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||||||| | || || |||| |||||| |||| || || ||||| ||||| Sbjct 4962 CAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTTCA 4904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178991290549744