Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq77412 118 1e-21 seq53184 116 4e-21 seq146712 93.3 4e-14 seq47011 93.3 4e-14 seq105237 84.2 2e-11 >seq77412 Length=2780 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | || ||||||||||||||||| ||| | ||||| |||||| Sbjct 134 AACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTC 193 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | |||||| ||| ||||||||||| || || |||||||| || Sbjct 194 CAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 253 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | || || | || || ||||| | || | || || Sbjct 254 GATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCTT 313 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || | ||||||| |||||| ||||| Sbjct 314 ACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq53184 Length=5087 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||| || || ||||| |||||| | |||||||| | | Sbjct 4685 GATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCTAATTGTTTACCAGCA 4744 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| ||| ||||||||||| || || ||||||||||| |||||| ||| | Sbjct 4745 AAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACA 4804 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||| || || || | || | ||||||||||| | ||| ||| Sbjct 4805 TTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTT 4864 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 4865 ACGAAAATTTGCAT 4878 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || ||||| | | |||||||||||||| |||||||| | || ||| | Sbjct 4436 CGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCA 4495 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| ||| ||||| ||||| || || ||||||||| Sbjct 4496 TCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTA 4555 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | || | ||||| | ||| || || || | || | Sbjct 4556 TCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATT 4615 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| | ||| || | |||||| ||||| Sbjct 4616 GTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || ||||| |||||||||||| | ||||| |||||| Sbjct 4898 ACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCC 4957 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | |||||||| | | |||||| ||| ||||||||||| ||||| ||||||||||| Sbjct 4958 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATC 5013 >seq146712 Length=6971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 195/284 (69%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 |||| || |||||| | || || || || || ||||| | ||||||||| || |||| Sbjct 2385 CAACGGTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCCAGTTT 2444 Query 146609 TGAGGCCACATCG-CCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCC 146667 | | || |||| ||| | | ||||| ||||| | | |||| | || || Sbjct 2445 TTAATCC-CATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTTCCGTAATTTGGTTCG 2503 Query 146668 GCCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATC 146727 || ||| | |||||||||||||||||||||||| ||||| || || || |||||| Sbjct 2504 GCTACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGATCCGCGGCCATC 2563 Query 146728 TCAATCATGCGTTTTGTCT-TCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATC 146786 | ||| | ||||||| || || |||||| | ||||| || || || || | || Sbjct 2564 TTAATTA-GCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCACGAA---TTTC 2619 Query 146787 T---GGAATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAA 146827 | || || ||||||| |||||||| || || || ||||| Sbjct 2620 TTGCGGGATTTCTTCAATATTTTGAATTGAACCATTTGCCGCAA 2663 >seq47011 Length=3271 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| || ||||| || || ||||||| |||||| | |||||||| | Sbjct 1494 GATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTCCAATTGTTTACCAGCG 1553 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| ||| ||||||||||| || || |||||||| || ||||| || | Sbjct 1554 AAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTGGATTTTAGCCTTGACA 1613 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||||| ||||| || || | || | || || || || || |||||| Sbjct 1614 TTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTT 1673 Query 132110 ATGAAAATCTGCATGA 132125 | || || ||||||| Sbjct 1674 ACAAAGATTTGCATGA 1689 >seq105237 Length=11214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | ||||| ||||| || ||||| || || || | |||||| Sbjct 9091 ACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTCT 9032 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| || | | | || ||||| ||||||||||| || || ||||||||||| | Sbjct 9031 AATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGA 8972 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | ||||| | || || || || | || | || || Sbjct 8971 ATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTTG 8912 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||||||| || || ||||| Sbjct 8911 CCCGTCAATGTTTTTACAAAGATTTGCAT 8883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497931559040