Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq105237 122 8e-23 seq47011 109 5e-19 seq77412 102 7e-17 seq53184 100 3e-16 >seq105237 Length=11214 Score = 122 bits (134), Expect = 8e-23 Identities = 160/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | |||||||||||||| || || || | ||||| | || |||||| | Sbjct 8879 CAAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAA-C 8937 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || | ||||| || || | || ||| |||||| |||||||| ||||| || || | Sbjct 8938 CATCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAG 8997 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGA 25347 |||| ||| | ||||||| | ||||||||| | ||||||| ||| | |||| || Sbjct 8998 ATCAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTC--TGA 9055 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||| ||||| || || || | ||||| ||| Sbjct 9056 TTACAATATCCAAAAGGAGTCGACATTACATTTGGTG 9092 >seq47011 Length=3271 Score = 109 bits (120), Expect = 5e-19 Identities = 162/224 (72%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 25165 ATTAAA-CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 |||||| || ||||||| | |||||||||||| | || ||||| | || || | || | Sbjct 1698 ATTAAATCATCATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGG 1639 Query 25224 TCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATA 25282 | || |||| | ||||||||||| | || || ||||| || ||||| || || Sbjct 1638 TTGA-GCCATCCGATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATT 1580 Query 25283 CCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATG 25340 || || ||||| ||| | | |||| || || |||||| | ||||||| | | || Sbjct 1579 CCACCAGATCAACAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTG 1520 Query 25341 TCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||||||||| ||||| |||||||| ||||||||||| Sbjct 1519 TC--GGATTACAATATCCAAAAGGAATCCACACTTCATTTAGTG 1478 >seq77412 Length=2780 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || |||||||| |||||||| || | ||||| | ||||| ||| ||| | Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAA-CCATC 285 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| |||||| || ||||| || || || || ||||| Sbjct 284 AGACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCA 225 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | | ||| |||||| | ||||||| | | | | ||||||||| Sbjct 224 ACAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAA 165 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| || ||||||| || Sbjct 164 CATTCAAAAAGAATCTACACTTCATTTGGT 135 >seq53184 Length=5087 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || ||||| || ||| | ||||| | || || ||| | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || ||| ||||| |||||||| || || || || || || Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || ||||||||| || ||||||| ||| | || |||||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||||||||||| || || |||||||||| ||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTA 4438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444054748500480