Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq105237 87.8 2e-12 seq98090 84.2 2e-11 seq77412 84.2 2e-11 >seq105237 Length=11214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||||||| || ||||||||| || |||||||| | | Sbjct 9109 CCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGAC 9050 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || || | || || || ||||| || | || || || || | ||| Sbjct 9049 AATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGA 8990 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || || ||| ||| ||| || || | | || | | || || | ||| || Sbjct 8989 ATACCTTCTTTATCC-TGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGAC 8931 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||| | ||||| || || |||||||| ||||| ||||| || |||||| || Sbjct 8930 CTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTTG 8879 >seq98090 Length=13235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 196/293 (67%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 44129 TTTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCG 44188 ||| ||||| || || ||| |||| || | || || |||||||| || ||||| Sbjct 10866 TTTATGGAATGCAGCTCAATTACAATTGGTTAATGAGGGGAAAATGCATGGATTTATGCG 10925 Query 44189 TATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCA 44248 ||||||||| || || || | || ||| | ||| | | || || ||| Sbjct 10926 AATGTATTGGGCGAAAAAAATCCTCGAATGGACTGAAAGTCCAGAAGAAGCTCTCCGAAT 10985 Query 44249 TGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGG 44308 ||| |||||| | || || || ||||| ||||| | || || || || || || || Sbjct 10986 TGCTATCTATTTAAATGATCGATATAGTTTAGACGGAAGGGATCCTAATGGCTATGTGGG 11045 Query 44309 ATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTACG 44367 ||||||||||| ||| | || ||||||| || || ||| || | ||||| | | Sbjct 11046 CTGTATGTGGTCAATTGGTGGAATCCACGATCAAGG-ATGGGCTGAACGGCCCATTTTTG 11104 Query 44368 GCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAA 44420 | ||| | |||| |||||| || | || || ||||||||||||||||| Sbjct 11105 GTAAAATACGCTTCATGAATTATAGTGGATGTAAACGAAAGTTTGATGTAAAA 11157 >seq77412 Length=2780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| || ||||||||||||||||||| Sbjct 117 CCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAT 176 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || ||||| ||||| || || || || || || | ||| Sbjct 177 AATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 236 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || ||||| ||| |||||| || | | || | | ||||| | ||| || Sbjct 237 ATTCCTTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTAC 295 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| || || ||||| || || || ||||| Sbjct 296 TTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449740636309120