Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq77412 141 9e-29 seq53184 132 5e-26 seq105237 123 3e-23 seq47011 96.9 3e-15 >seq77412 Length=2780 Score = 141 bits (156), Expect = 9e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||| |||||||||||||| ||| | || || || || | ||| Sbjct 141 TGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCCAATTGT 200 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || ||||| || ||||| || || || |||||||| ||||| |||||| Sbjct 201 TTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTT 260 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | |||||| || | ||| || || ||||| || || ||||||||| Sbjct 261 GCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCTTACCGGTT 320 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||||||||| Sbjct 321 AAGGTTTTTACGAAAATTTGCAT 343 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||||||||||||||||||||| ||| | || || || || | || Sbjct 369 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCTAATTGC 428 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||| | ||| || ||||| || || || ||||| || ||||| ||||| Sbjct 429 TTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTA 488 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTC 134668 |||||| || | ||| || || | |||||| || Sbjct 489 GCTTTGACATTCTCAATTGTATCTGATGGTTCCACTTC 526 >seq53184 Length=5087 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || |||||||||||||| |||||||| || | ||| | | || || || | | Sbjct 4675 GTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATG-TACGACCATCTTCTAATT 4733 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || ||||| || ||||| || ||||| || || || |||||||| |||||||||| Sbjct 4734 GTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTT 4793 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | ||| || || | || ||||||| ||| || || | || || |||||||| | Sbjct 4794 TGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTACCAG 4853 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||| || |||||||||||||| Sbjct 4854 TTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || || |||||||| |||||||| || || | || || |||||| Sbjct 4448 TGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTCTAGCTGT 4507 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||| ||||| || || || || || || |||||||| ||||| ||||| Sbjct 4508 TTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGGATTTTG 4567 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | || || |||| ||| || || | || || |||||||| ||| Sbjct 4568 GCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTT 4627 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||||||||| Sbjct 4628 AAAGTCTTGACGAAAATTTGCAT 4650 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| |||||||||||| | || || || || | ||| Sbjct 4904 TGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCCAATTGT 4963 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || ||||| || ||||| || ||||| |||||||| ||||| || || Sbjct 4964 TTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATCTTGGATCTTG 5023 Query 134631 TGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| | || | |||| |||||||| | ||| || || | |||||| || |||||||| Sbjct 5024 GCTTTTA-CGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGTCTTACCGGT 5082 Query 134690 TAA 134692 ||| Sbjct 5083 TAA 5085 >seq105237 Length=11214 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | ||| | |||| || || |||||||| || ||||| || | | Sbjct 9109 CCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGAC 9050 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || | || || | ||||||||||||||||| | ||| || ||||| || || Sbjct 9049 AATGTTCTGCCA-TCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGG 8991 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || |||||||| |||||| || | ||| || || | ||| || Sbjct 8990 AATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGAC 8931 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || || ||||| || || |||||||||||| Sbjct 8930 CTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTTG 8879 >seq47011 Length=3271 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || |||||||||||||| || ||||| | || ||| ||| | || || | || Sbjct 1485 TGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAA-GGTACGCCCATCTTCCAATTG 1543 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| ||||| || ||||| || || || |||||||| ||||| ||||| Sbjct 1544 TTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTGGATTTT 1603 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | || ||||| | || || || || || ||||| || || || Sbjct 1604 AGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTTTCCCGT 1663 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 | ||||| || || |||||||| || ||| Sbjct 1664 AAGTGTTTTTACAAAGATTTGCATGATGATTT 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504217890417280