Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq146712 529 2e-145 seq115302 250 3e-61 >seq146712 Length=6971 Score = 529 bits (586), Expect = 2e-145 Identities = 1184/1757 (67%), Gaps = 81/1757 (5%) Strand=Plus/Plus Query 68364 CTTATCCAATGTAAACTGAATGG-GTGAGGATGCGGGTTTTGTACGTAGATAGTACATAC 68422 |||||| | ||||| || || | || | | || || || || |||||||| ||||| | Sbjct 2380 CTTATCAACGGTAAATTGTATAGCGTTTGCA-GCTGGCTTCGTGCGTAGATAATACATTC 2438 Query 68423 CGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTG 68482 | ||||| | || | |||| || || ||||| ||| ||||| || ||| ||| Sbjct 2439 CAGTTTTTAATCCCATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTTCCGTAATTTG 2498 Query 68483 GATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542 | ||||||| || ||||| | |||||| |||||||| || ||||| || | ||| || | Sbjct 2499 GTTCGGCTACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGATCCGCGG 2558 Query 68543 CCATTTTTATAA----------------------TACTCTTTTG--------AGGAATTT 68572 |||| || || | |||| |||| | |||||| Sbjct 2559 CCATCTTAATTAGCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCACGAATTT 2618 Query 68573 C---CCAAATAGTCTTAAAAATCTGT--TTGATATCATCTGG---AAGGCTCG-TATTTT 68623 | | || |||| || || | |||| | ||| || || || |||||| Sbjct 2619 CTTGCGGGATT-TCTTCAATATTTTGAATTGA-ACCATTTGCCGCAATANTCAATATTTT 2676 Query 68624 GAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCT 68683 |||| | ||| | | |||| ||| || || ||||||| ||||| | | | Sbjct 2677 GAATTAAACCATTTACCGCAATAACGCGATTTTTTATGTCATCATCCCACAGATCTAATT 2736 Query 68684 CCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATA--ACAC-TC 68740 | ||||| | | | | ||| | || |||| ||||||||| ||||| | |||| || Sbjct 2737 CGGTTAAGTCCTTTATCAAATGGTGGTTTACTACTTGAAATTCACCAGAAAGTACACGTC 2796 Query 68741 TACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAG 68800 | || | || | | || ||||| ||||| | ||||||||||||||||| |||||| | Sbjct 2797 T-CGTATATACGTTTGAC--GTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTG 2853 Query 68801 CAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGA 68860 | || || ||||| ||||| || || | | | | |||||||| ||||| | || Sbjct 2854 CGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCTTCGCGA 2913 Query 68861 TTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGT 68920 |||| | || | |||||||||| | ||| | ||| |||||| | ||| | Sbjct 2914 TTTTTGCCTTCAACGCGGTCCAATCCCATAAATCTGTTGGAGTTTTATTCCACATATCAT 2973 Query 68921 ATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTT 68980 | || | || || |||||| | ||| | ||||||||| || | ||| | || Sbjct 2974 ACTGCAAGATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGTAGGTGCCTAATTTTT 3033 Query 68981 CAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 |||||||||| ||||| || |||||||||||||| || ||||| |||||||| | || | Sbjct 3034 CAGCTAGTTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCTGGT 3093 Query 69041 TGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCA 69100 | | |||||| ||| ||| || ||| |||| | | | || |||||||| |||| Sbjct 3094 TTAATAATTGTGCCTCTTCACTTTCATATGCATAACGCATTAATATGAATGCATCAGCCA 3153 Query 69101 ATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAA 69160 || || || ||||| || || |||| ||||||| |||| |||| || ||||| || | Sbjct 3154 TACCTTGTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTTTGCTTCAGGGA 3213 Query 69161 TAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGT 69220 | ||||| ||||||| ||| || |||||||| | |||| || | |||| || | Sbjct 3214 TTGGATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGTAACTT 3273 Query 69221 CCTTTAGTTTGAGAAAATCAAA---TCGTCCAT---CTATAACAAACATATTCAGTGCTA 69274 | || | ||| |||||| | | | ||| | | ||||||||||| || || | Sbjct 3274 CTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAACATTTACAAACATATTGAGGGCGA 3333 Query 69275 CAGATGCTAGATTACAAACTGCTACCTCA---TTAGAATTTGCATATTGTATTATCTCTG 69331 || |||| ||||||||| ||||| ||| || || | | ||| || || || | Sbjct 3334 TTGACGCTAAATTACAAACGGCTACTTCATCTTTTGA---CGAAAATTCTACAATTTCGG 3390 Query 69332 TACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGG 69391 |||| | ||| |||||| || || || | |||||| ||||| ||| ||||| | Sbjct 3391 TACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATTACAAG 3450 Query 69392 CGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCC 69451 | || || || || ||| ||||| |||||||||| ||| ||| ||||||| | || Sbjct 3451 CATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAGCATACC 3510 Query 69452 AAACGACCCTAGCATTT---ATTACGGTCTTG-TAACG--CTTCTCTTTTTCATATTGTG 69505 | | || | | ||| || || | | |||| |||| | ||||||||| Sbjct 3511 ATA-GAGATTGGGCTTTCACTTTGCG---TAGAAAACGGCCTTCGC--TTTCATATTTCT 3564 Query 69506 TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGAC 69565 |||||| ||| ||||||||||||||| ||| | | ||||||||||| | |||| Sbjct 3565 CATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTCGTGAGGAC 3624 Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625 |||| || ||||| | |||| | | ||| || |||||||||| ||||| ||||| | Sbjct 3625 ACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCATA 3684 Query 69626 GAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA 69685 | || ||| | ||||| || ||| ||| || || ||||||||||| || | ||| | Sbjct 3685 GTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATCAA 3744 Query 69686 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTT 69745 |||| || | ||||||| |||||| ||||||||||| || || | | || || |||| Sbjct 3745 GAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACGTT 3804 Query 69746 TATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 | || || || ||||| | ||| | ||||| ||||| || ||||| | || || | || Sbjct 3805 TGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGGTACAA 3864 Query 69806 TACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAA 69865 |||||||| |||||||||| || | |||||| ||| |||| |||||| | || Sbjct 3865 GCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATACAATGAA 3924 Query 69866 TAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCAT 69925 | || ||||| |||||||| ||| || |||| ||||| |||||||||| |||| Sbjct 3925 CATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGTATCAT 3984 Query 69926 ATATACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACA--GCTAGACATTTGAT 69982 | ||||| || || ||||| || || |||||| || ||| || | | | | || | Sbjct 3985 AAATACCATCGATACTATCTTCCGACATTGTTAACAA-AAAGCATGACGATAACTGTGGT 4043 Query 69983 -GATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAA 70041 || || ||||| || ||| | || || || || |||||||| || |||| || Sbjct 4044 CGAGGT---GTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAATATCTTTCCGAT 4100 Query 70042 AGCAGATTGTATGTTTC 70058 | | |||||| ||||| Sbjct 4101 AATAAATTGTACGTTTC 4117 Score = 105 bits (116), Expect = 9e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 70083 ATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATT 70142 |||||| || || ||||| ||||| | |||||||||||||| ||| | |||| || Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAATTTTTCGTTT 4570 Query 70143 TATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 |||||||||| || ||| ||||| ||||||||||||||||| ||||| ||| || Sbjct 4571 AATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAATC 4630 Query 70203 TCTTTCGTAAATAATAACAGAATTTA 70228 | || ||||| ||| | ||||||| Sbjct 4631 ACGATCATAAATTATAGCTGAATTTA 4656 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 70345 ttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 |||||||| ||||| |||||||| |||| ||||| | || || | || |||||||||| Sbjct 4836 TTTTTTGTCTCCTTATGTAAATTAGATACGGCTAAACGTGCAGCCAAAACAGCATAGTCA 4895 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 | ||| | ||||| ||| || || |||| |||||||| |||| |||||| ||| Sbjct 4896 GCATGATCGGTAGTCTTAGTTGCGGCCGTTTCTGCAGCTAAATTATCCAATTCTTGGGTT 4955 Query 70465 GTAACTCCGTTATATAGCCCTTGAATAACTTT 70496 ||||| || ||||| || ||||||||| Sbjct 4956 GTAACACCAACATATAAACCACCAATAACTTT 4987 >seq115302 Length=2783 Score = 250 bits (276), Expect = 3e-61 Identities = 388/554 (70%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 39598 TAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAA 39657 ||||||||||||||| | || || || ||||| |||| || || ||||| |||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 39658 TTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGC 39717 |||||| |||||||| | || ||||| || ||||| ||||| | ||||||||||| || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 39718 AAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA 39777 ||| ||| |||||| || ||||| || ||||| ||||||| || | || || | Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 39778 ACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | | || | ||||| | | ||||| ||||||||||| |||||||| || Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 39835 CATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATC 39894 | ||||| | ||||| || | | | | || | |||| | ||| ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 39895 TATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 |||| ||||| ||||| || ||||| | ||||| || || || ||||| ||||| || Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 39955 ACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCAC 40014 ||| | |||||| || ||||| || ||| | || | ||| | |||||||| || || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 40015 TATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGG 40074 || |||||| || || |||||||| | ||| || |||||| | |||| || Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 40075 TGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134 | | | | || ||| ||| || |||||||||| || |||||||||||||||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Query 40135 CGACGCCTCTGCCT 40148 || || || |||| Sbjct 2286 TGATGCTTCCGCCT 2299 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 |||||||| || ||| || ||||| | || ||| ||||| ||||| |||||||| Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 ||||||||||| ||||||||| | || ||||| | | || || |||||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || ||||| | || | ||| || ||||| || || ||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGAT 39543 ||||| || | | || ||||| | || || |||| |||||||| ||| || Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685304318424960