Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq115302 269 2e-67 seq123327 221 1e-52 seq146520 152 4e-32 seq106041 84.2 2e-11 >seq115302 Length=2783 Score = 269 bits (298), Expect = 2e-67 Identities = 385/535 (72%), Gaps = 19/535 (4%) Strand=Plus/Minus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || |||||||||||||| ||||||||||| | | |||||| | || ||||| |||| Sbjct 2291 GCATCATTTTGGACAGCTGAAGAAGTTGACCTATCAAAAGACATGGCTGATTGGGATGCA 2232 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 ||||||| ||| || ||||| || || | || ||||| || || || Sbjct 2231 CTAAAACCGTCTGAACGTCACTTTATTTCGCACGTACTTGCATTTTTCGCAGCATCTGAT 2172 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || || || || |||||||| ||| || || |||||||||||| || | |||||| Sbjct 2171 GGTATTGTAAACGAAAATTTAGTTGAACGTTTCAGCCAAGAAGTTCAAATAACCGAAGCA 2112 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| || ||||||||||||||||| |||||| ||||||| || |||||||||||| Sbjct 2111 CGTTGTTTCTACGGGTTTCAAATTGCCATGGAAAATGTTCATTCCGAGATGTACAGTCTT 2052 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA----TTGTTTAATGCGAT 44052 || || |||||||| ||| |||| || || ||| | || || || ||||| | Sbjct 2051 CTAATTGATACGTATATCCGAGAT--CCAAAAG-AGCGT-GACTTTTTATTCAATGCCGT 1996 Query 44053 AGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 ||||| |||| || | | ||| | ||||| ||||||||||| ||||||| ||||| Sbjct 1995 TGAAACTTTACCATGTG-TAAAAAAGAAAGCTGACTGGGCCCTACAATGGAT---TTCAA 1940 Query 44112 ATGATTC------TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 | || |||||| ||||| || | || || |||| |||||||| ||||||| Sbjct 1939 GCAAATCGGCGAATTTTGGTGAACGTATTATTGCATTCGCAGCGGTGGAAGGAATTTTCT 1880 Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 || || || || ||||||||||||| || ||||| || | ||||| || |||| Sbjct 1879 TTAGTGGGAGTTTCGCATCCATATTTTGGTTGAAAAAACGTGGCCTCATGCCAGGTTTGA 1820 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | ||||| || || ||||| | || ||||| ||||| || |||||||| || Sbjct 1819 CATTTTCGAACGAACTAATATCAAGAGACGAAGGATTACACTGTGATTTTGCGTG 1765 >seq123327 Length=3505 Score = 221 bits (244), Expect = 1e-52 Identities = 396/585 (68%), Gaps = 32/585 (5%) Strand=Plus/Minus Query 19257 TAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGT 19316 |||||| ||| || || |||||| | || |||| || || || ||| | | || || Sbjct 1656 TAAAGAATTTAATGCGATATTTCGTCGTGCTTTTGCTTCTCGCGTATTTCCACCGGAAGT 1597 Query 19317 CATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTG 19376 || ||||||| || |||||||| ||| || ||||| | || || || || || Sbjct 1596 TGTTGAACAATTAGGGTGTAAACACGTTAAAGGTATTTTGTTATACGGACCGCCAGGCAC 1537 Query 19377 TGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAAT 19436 ||| ||||| ||||| || ||| || | | ||| | | | || || ||||| Sbjct 1536 TGGTAAAACTTTAATGGCAAGACAAATCGGCAAAATGTTGAATGCACGGGAACCAAAAAT 1477 Query 19437 TGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACG 19496 ||| ||||| ||| | || ||| |||| ||||||||| ||||||||| ||||||||||| Sbjct 1476 TGTTAATGGCCCTCAGATTTTAGATAAGTATGTAGGTGAATCGGAAGCTAATGTACGACG 1417 Query 19497 TTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACAT 19556 | |||||||| |||||||||||| ||||||||||||| | ||| || Sbjct 1416 GCTTTTTGCTGATGCTGAAGAAGAAGAAAAACGTTTAGGACCCAACAGNNNNNNNNNNNN 1357 Query 19557 T----------------------ATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 ||||| | |||||| | || || || ||||| || Sbjct 1356 NNNNNNNNNNNNNNNNNNNNNNCATAATTTTTGATGAAATAGATGCTATTTGTAAATCAA 1297 Query 19595 GAGGTTCTGGTG------TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 ||||||||| || | ||| || ||||| |||||||| ||||| || || | | Sbjct 1296 GAGGTTCTGTTGCGGGCAACAGTGGTGTTCATGATACTGTTGTTAATCAGCTACTAGCTA 1237 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 | | ||||| || | ||||| ||||||||||||||||| || ||||||||| ||| | Sbjct 1236 AGATTGACGGAGTCGAACAACTTAATAATATTTTAGTTATCGGAATGACTAATCGACGTG 1177 Query 19709 AATTAATAGA--CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAA 19766 | | || || |||| || || | |||||||||| |||||| | | || |||||| Sbjct 1176 ATATGATTGATGAAGCG-CTGATGA-GACCCGGTCGATTGGAAGTGCAAATGGAAATTGG 1119 Query 19767 CTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 ||||| | ||| |||||| |||||||||| |||||||| Sbjct 1118 ATTACCAAACGAAGAGGGACGTCATCAAATTTTAAATATACATAC 1074 >seq146520 Length=2054 Score = 152 bits (168), Expect = 4e-32 Identities = 286/417 (69%), Gaps = 4/417 (1%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || ||||| ||| ||| || ||||| || || ||| | | | ||||| | ||||| Sbjct 433 CGTCGTATCATAATGTCGGCATGGAATCCCACCGACATCCCACTTATGGCCCTACCACCA 492 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||||| | ||| ||||||||||| | ||||||||||| || ||| ||||||||| Sbjct 493 TGTCATGTTCTATCACAGTTTTACGTGTCAAATGGTGAACTATCGTGTATGTTGTATCAA 552 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 | || | || ||||| || || || || ||||| || || || ||| |||||| ||| Sbjct 553 CGTTCCGCCGATATGGGCCTTGGTGTGCCATTTAATATCGCTAGCTATTGTCTGCTGACG 612 Query 41184 TATATGATTGCACACGTTAC-CAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 |||||||||| || || || | |||||| | || || ||| |||| || | || || Sbjct 613 CATATGATTGCGCATGTGACGGGACTTAAAA-CAGGCGATTTTATTCATACAATGGGCGA 671 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAG 41302 || |||| |||| | ||| |||| || | || ||| || |||||||| | Sbjct 672 TGTACATGTTTATCTAAAT--CATATCNCCACTGCAGGAGCAATTGGTGCGAAAACCAAA 729 Query 41303 ACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGA 41362 | ||| |||| || || ||||| ||| || ||||| |||||| ||||| Sbjct 730 AGAATTCCCAAAACTTAAAATCAAACGAAATGTAACGAAAATTGAAGATTTTACAATCGA 789 Query 41363 TGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGT 41419 |||||| | || ||| || ||||||| || ||| | |||| |||| |||| Sbjct 790 TGATTTGGAAGTGGTCGACTATGATCCGTATCCACCAATTAAAATGGCCATGGCTGT 846 >seq106041 Length=2087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 || |||| |||||||| || |||||||||||||| ||||| || |||| || | ||||| Sbjct 1537 AACCACGCTGTTTTTACGGATTTCAAATTGCCATGAAAAATGTTGATTCCGAGACGTACA 1478 Query 43992 GTCTTCTGATAGATACGTA 44010 |||||||||| ||||| || Sbjct 1477 GTCTTCTGATTGATACATA 1459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396550831718320