Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq146712 250 2e-61 seq53184 118 9e-22 seq105237 114 1e-20 seq47011 102 7e-17 seq77412 98.7 8e-16 >seq146712 Length=6971 Score = 250 bits (276), Expect = 2e-61 Identities = 884/1365 (65%), Gaps = 42/1365 (3%) Strand=Plus/Plus Query 130736 TCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAA 130795 || |||| |||||| | || | | |||||| ||||||| || || ||||| |||| Sbjct 2745 TCCTTTATCAAATGGTGGTTTACTACTTGAAATTCACCAGAAAGTACACGTCT--CGTAT 2802 Query 130796 AT--GTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 || ||| ||| | ||||| || ||||| || || || || |||||||| |||| | Sbjct 2803 ATACGTTTGACGTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTGCGGTAGAAG 2862 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| || | | |||||||| | || || ||| ||| ||||||| || Sbjct 2863 CAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCTTCGCGATTTTTGCCT 2922 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTA 130973 |||| | ||||||||||| | || || | || |||||||||||| | || | Sbjct 2923 TCAACGCGGTCCAATCCCATAAATCTGTTGGAGT---TTTATTCCACATATCATACTGCA 2979 Query 130974 GTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCA 131033 ||||||||||| | ||||| ||| | | ||||||| | ||| ||| | Sbjct 2980 AGATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGTAGGTGCCTAATTTTTCAGCTA 3039 Query 131034 GGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATT 131093 | ||| |||||||| || || ||||| || || || ||| |||||| | |||||| Sbjct 3040 GTTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCTGGTTTAATA 3099 Query 131094 GTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 || || | | || || || | | | |||||| || || || || || | ||| | Sbjct 3100 ATTGTGCCTCTTCACTTTCATATGCATAACGCATTAATATGAATGCATCAGCCATACCTT 3159 Query 131154 GTATCCCAACGCCCACCGGTCTATGTTTTAAATT---ACATTTACGCGAACATTC---GG 131207 ||| |||| || | |||| |||| | | ||| || ||| || ||| | Sbjct 3160 GTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTT-TGC-----TTCAGGGA 3213 Query 131208 TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGC 131267 | ||||| |||| ||||||||||| |||||||| ||||||| || || Sbjct 3214 TTGGATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGTAACTT 3273 Query 131268 TTTTCAATTTGTCGAAATCAAACGTGCCAGTTTC---GAGGTTTACAAATTGATTTACAC 131324 |||||| |||| ||||| | | |||| | |||||||| ||| | Sbjct 3274 CTTTCAACTTGTTAAAATCGTATTT---TTTTTCATTAACATTTACAAACATATTGAGGG 3330 Query 131325 ATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGG 131384 |||||||| | ||||||||| || ||| || | || | | |||||||||| Sbjct 3331 CGATTGACGCTAAATTACAAACGGCTACTTCATCTTTTGACGAAAATTCTACAATTTCGG 3390 Query 131385 CGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACAT 131444 |||||||| | || ||||| || | ||||||||||||| ||| ||| ||| Sbjct 3391 TACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATT-ACAA 3449 Query 131445 G-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT-GTAT-C 131501 | || || |||| ||| || || || ||||| |||||| |||||||||| | || | Sbjct 3450 GCATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAGCATAC 3509 Query 131502 GAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGT 131561 | |||| || | || || || | | |||| |||| || || || | Sbjct 3510 CATAGAGATT--GGGCTTTCACTTTGCGTAGAAAACGGCCTTCGCTTTCATATTTCTCAT 3567 Query 131562 ACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACA 131621 | | ||||||| | | || | || || | | ||||||||| ||||||| Sbjct 3568 ATAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTCGTGAGGACACA 3627 Query 131622 TTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACG 131681 ||| ||||| | | || |||||| ||||||||||| || || || | ||||| | Sbjct 3628 TTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCATAGTG 3687 Query 131682 CGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAA 131741 | || |||| ||||| || | || ||| |||| || |||| || |||| | || Sbjct 3688 CATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATCAAGAA 3747 Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC------TTTGC 131795 | || ||||| || ||||||| ||||| | ||| | || | |||||| |||| Sbjct 3748 ATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACGTTTG- 3806 Query 131796 GCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCA 131855 ||||| ||||||| ||| | ||| | | || ||||| || | |||| || | | Sbjct 3807 --TTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGGTACAA 3864 Query 131856 AACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAA 131915 || || | | ||||| || | | ||| || || || |||| || |||| Sbjct 3865 GCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATACAATGAA 3924 Query 131916 CGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTAT 131975 | || || || |||||||| | |||| || |||| ||| |||| | | || | || Sbjct 3925 CATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGTATCAT 3984 Query 131976 AGATACCTTCCACGCTGTC-CGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGG 132034 | ||||| || | || || || || ||| || |||||||| || || |||||| | Sbjct 3985 AAATACCATCGATACTATCTTCCGACATTGTTAAC-AAAAAGCATGACGATAACTGTGGT 4043 Query 132035 TGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAA 132079 || ||| || || | ||||| || || ||| || || ||| Sbjct 4044 CGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAA 4088 >seq53184 Length=5087 Score = 118 bits (130), Expect = 9e-22 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| || ||||| | || ||||| ||||| | ||||| ||||||||||||||||| Sbjct 4417 TTATTGGCCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTA 4476 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 ||| | | ||| | ||||| |||||||| |||||| |||| | ||| ||||| || Sbjct 4477 GTCAGAAAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTC 4536 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | || |||||||| ||| ||| ||| | | || | || || | | Sbjct 4537 TGGTGGAATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGG 4596 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| |||| || || | ||| || || | ||| || || || ||||||||| Sbjct 4597 TTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCATA 4651 >seq105237 Length=11214 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTC 27097 ||||||||||| || || || ||||| |||||||| || || |||| || | ||||| Sbjct 9091 ACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGC-CATCTTC 9033 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| || || |||||||||| |||||||| || || | ||| |||||||| Sbjct 9032 TAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 8973 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||| | |||| | || |||| | ||| || || || || || | || Sbjct 8972 AATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTT 8913 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| |||||||||||||| Sbjct 8912 GCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq47011 Length=3271 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || ||||| |||||||| || || | | ||| | ||||| Sbjct 1479 ACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTCC 1538 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| |||| | ||| |||||||| || || | || ||||| || | Sbjct 1539 AATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTGG 1598 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || || | |||| | ||| || | ||||| |||| || || ||||| | || Sbjct 1599 ATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCT-CAACCTCAAGGGTTATGGTCTT 1657 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || ||||| |||||||||||||| Sbjct 1658 TCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq77412 Length=2780 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | ||||| ||||||||||| ||||| || | | ||| | || | ||||| Sbjct 135 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATG-TACGACCATCTTC 193 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||||||||| | || | ||| |||||||| || || | || ||||| || Sbjct 194 CAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 253 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| || ||| | |||| | ||||||| | ||| ||||| ||||| || | || Sbjct 254 GATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCTT 313 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||||| || || ||||||||| Sbjct 314 ACCGGTTAAGGTTTTTACGAAAATTTGCATA 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423966652272768