Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq146712 114 2e-20 >seq146712 Length=6971 Score = 114 bits (126), Expect = 2e-20 Identities = 438/683 (64%), Gaps = 10/683 (1%) Strand=Plus/Minus Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || || ||||| || ||||| || ||||| | ||| |||||| | ||| | ||| Sbjct 3472 CCGTATATGCTGTATAAAGATGCTTGTAATCGAAAATCCAATCAACAAAATATCGGTACC 3413 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 || || |||||||| | ||||| ||||| | |||||| | |||||||| || Sbjct 3412 ATTAAATGTTCCAATTTGTGTACCGAAATTGTAGAATTTTCGTCAAAAGATGAAGTAGCC 3353 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 105106 || ||||| | || |||||||| ||| | || ||| || | ||| | || Sbjct 3352 GTTTGTAATTTAGCGTCAATCGCCCTCAATATGTTTGTAAATGTTAATGAAAAAAAATAC 3293 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 |||| | | || | | |||||||| |||| ||| || ||||| |||| | | | ||| Sbjct 3292 GATTTTAACAAGTTGAAAGAAGTTACTAAAATTGTGACAAAAAATTTAAATAAAATAATT 3233 Query 105167 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||| |||| || || | ||| | ||| || ||||||||||| || ||| Sbjct 3232 GATGTTAATTACTATCCAATCCCTGAAGCAAAACGT---TCCAATATGAGACATCGACCA 3176 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 ||||| | ||||| || ||| | || |||| |||||| | || | |||| ||| Sbjct 3175 ATTGGGATTGGTGTACAAGGTATGGCTGATGCATTCATATTAATGCGTTATGCATATGAA 3116 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || || || | | | || || || || ||||| || || ||| || | Sbjct 3115 AGTGAAGAGGCACAATTATTAAACCAGCAAATTTTCGAGACAATATACTACGGTGCATTA 3056 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 || || |||| || | || || || | || ||||| | ||| || |||| Sbjct 3055 GAAGCTAGTTGCGAACTAGCTGAAAAATTAGGCACCTACGAAACATATGAAGGAAGTCCA 2996 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA--AGCTTCACTACG 105461 | |||| | | || | |||||||| |||| | ||| || || | | | Sbjct 2995 GTAAGTAAAGGCATCTTGCAGTATGATATGT-GGAATAAAACTCCAACAGATTTA-TGGG 2938 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||| || | |||| | ||| | || | || || | || ||| ||| | | Sbjct 2937 ATTGGACCGCGTTGAAGGCAAAAATCGCGAAGCATGGAGTTAGAAATTCTCTTCTCTTAG 2878 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||||||||| || || || ||||||||||| ||||| |||||||||| || ||||||| Sbjct 2877 CTCCAATGCCGACTGCTTCTACCGCACAAATTTTGGGAAATAATGAATCTTTCGAACCCT 2818 Query 105582 ACACGACGAACATCTATCTGAGA 105604 | ||| | ||| | ||| |||| Sbjct 2817 ATACGTCAAACGTATATACGAGA 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581898419423360