Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq97295 98.7 1e-15 >seq97295 Length=11832 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/291 (68%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 118016 CCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCG- 118074 || ||||||||||| || ||| ||||| ||| ||||| ||||||| || |||||||| Sbjct 3424 CCTTTGATATGGGATCCATCCTGATCCTGATCTGTCATTATCATCATTCGACCGTACCGA 3483 Query 118075 --------TAAATCTCTCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTT 118126 |||||| || || ||||| | || ||| || || | || || Sbjct 3484 AGAGTTTTTAAATCATCCATGGTATTATACTTGTGTTTATATTGAAGTCCAACAATTTTA 3543 Query 118127 TTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG-GTGGCGTCCCGAACGTT 118185 ||||||| || ||| ||||||| | ||||| ||| || || || || || || Sbjct 3544 ATAAGGTTATTAATTTCTGCATTTTCAAGAATTTGTTT-ATGCGTAGCCTCGCGCACATT 3602 Query 118186 GCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCC 118245 | |||||| || ||||||||||| ||| | ||||| || || ||||| | |||||| Sbjct 3603 CAACAACTTACCACGAAGTGGAAACACACCATAATTGTCGCGTCCTACAACACCCAAGCC 3662 Query 118246 GGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCA 118296 || || || | | || || ||||| ||||| || | ||| || || || Sbjct 3663 GGAAACGGCTAAAGATTTAGCTGAGTCTCCCTCAGTCAAAATCAGCGTACA 3713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545937812867200