Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq47011 190 2e-43 seq53184 147 2e-30 seq105237 141 1e-28 seq77412 134 2e-26 seq115302 84.2 2e-11 >seq47011 Length=3271 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||||||||| || || ||||| || ||||| || || |||||||||||| || Sbjct 1690 ATCATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCA 1631 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| || | |||| | ||||||||||| || ||||| || || ||||| ||||| Sbjct 1630 TCCGATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGAT 1571 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||| ||||||| |||||||| ||| | || |||| |||||| | | || || Sbjct 1570 CAACAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTAC 1511 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||||||||||||||| |||||| |||| | |||||||| || || Sbjct 1510 AATATCCAAAAGGAATCCACACTTCATTTAGTGCTCCGTCTTCGTGGCGG 1461 >seq53184 Length=5087 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | || || || || || || | |||||||| | | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || ||||| || || || || |||||||| |||||||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| ||||||| || || || || || || |||| || || || | ||||| ||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | ||||| || || || |||||| |||| || ||||||||||| || ||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGGCCAA 4420 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || || || || || | |||||||| | Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || |||||||| || || || |||||||| ||||| || Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||||||||| ||| | || |||| |||||| | | || || || Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| ||||| | || | ||||| || ||||| Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGG 4652 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| |||||| | || || || || || | ||||| ||| | || || Sbjct 5082 ACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAAGCC 5023 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || || || ||||| || ||||| || || ||| |||| ||||||||||| Sbjct 5022 AAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTAAA 4963 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||| | || |||| |||||| || | ||||| || ||||||||||||| || |||||| Sbjct 4962 CAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTTCAT 4903 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | |||||||| ||||| Sbjct 4902 TTGGTACTTCGTCTTCGTGGTGG 4880 >seq105237 Length=11214 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || | || |||||||| || || |||||||| || || Sbjct 8882 AATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCATC 8941 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || |||||||||||||| || || || ||||| ||||| || Sbjct 8942 AGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGATCA 9001 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| |||||||| || || ||| | || |||| | || | | || || || Sbjct 9002 ACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTACAA 9061 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||| || || | ||| | || | ||||| || ||||| Sbjct 9062 TATCCAAAAGGAGTCGACATTACATTTGGTGCTCCGTCTCCGTGGTGG 9109 >seq77412 Length=2780 Score = 134 bits (148), Expect = 2e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || |||||||| || |||||||| |||||||| ||||| || Sbjct 511 GATACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAA 452 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||| |||||| | || |||| |||||| || | || || || Sbjct 451 CAACGTCTTATTTTCGCTGGCAAGCAATTAGAAGATGGTCGTACATTATCCGATTACAAC 392 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||||||| |||||| | || | |||||||| ||||| Sbjct 391 ATTCAAAAGGAATCCACACTTCATTTGGTACTTCGTCTTCGTGGTGG 345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||||||||| ||| | || |||| |||||| || | ||||| || Sbjct 736 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTATCCGACTACAAC 677 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||||||||| ||| | || | |||||||| ||||| Sbjct 676 ATCCAAAAGGAATCCACTCTCCATTTGGTACTTCGTCTTCGTGGTGG 630 >seq115302 Length=2783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 |||||||||||||||||| |||| ||| || || || ||| | ||||| || ||| Sbjct 1895 GTGGAAGGAATTTTCTTTAGTGGGAGTTTCGCATCCATATTTTGGTTGAAAAAACGTGGC 1836 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 || ||||||||| || | ||||||||||| || || || | ||||| || | ||| Sbjct 1835 CTCATGCCAGGTTTGACATTTTCGAACGAACTAATATCAAGAGACGAAGGATTACACTGT 1776 Query 64858 GAATTTGCG 64866 || |||||| Sbjct 1775 GATTTTGCG 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568978268967680