Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq77412 141 6e-29 seq53184 104 1e-17 >seq77412 Length=2780 Score = 141 bits (156), Expect = 6e-29 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || || ||||||||||| ||||| || Sbjct 117 CCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAT 176 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||||||||||||||| |||||||| ||||| || || || Sbjct 177 AATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 236 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | ||| || |||||| ||| ||||| ||| || | |||||||||| | | ||| Sbjct 237 ATTCCTTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCT-- 293 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || ||||||||||| ||||| || ||||| ||||| Sbjct 294 ACTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 91.5 bits (100), Expect = 9e-14 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||||||||||||| |||||||| ||||| || || || Sbjct 629 GCCACCACGAAGACGAAGTACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 688 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTT 34588 | ||| || | ||||| | ||||||||| ||||| |||||||| |||| Sbjct 689 TAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTT 738 Score = 89.7 bits (98), Expect = 3e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || ||| |||||||||||||| ||||| || Sbjct 345 CCACCACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAT 404 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || || || || | ||| ||||| || || || Sbjct 405 AATGTACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGA 464 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| ||| | ||| || | |||||| ||| ||||| Sbjct 465 ATTCCTTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCCAC 523 Query 34659 TTCCACGG 34666 ||||| || Sbjct 524 TTCCAAGG 531 >seq53184 Length=5087 Score = 104 bits (114), Expect = 1e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || |||||||| ||||| || || || Sbjct 4880 CCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGAT 4939 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||||||||| ||||| |||||||| ||||| || || || Sbjct 4940 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGT 4999 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT--TCGCTCTCCA 34657 | ||| || || ||| |||||| ||||| | ||| ||||| | | ||| | Sbjct 5000 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCT--A 5057 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAA 34685 |||||| || || || ||||||||||| Sbjct 5058 CTTCCAAAGTAATTGTCTTACCGGTTAA 5085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314012833235312