Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq77412 194 1e-44 seq105237 167 2e-36 seq98090 154 1e-32 seq53184 150 2e-31 seq47011 150 2e-31 >seq77412 Length=2780 Score = 194 bits (214), Expect = 1e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| | ||||| ||| | || ||||||||||| ||||| || Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||| |||||||||||||| || ||||| |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| |||||||||||||| || || | |||||||||||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||||||||| | ||| | || ||||| || Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGTCTTCGTGGTGGTAT 114 Score = 140 bits (154), Expect = 3e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGC 27092 ||||||||||| || || | ||||||| |||||| ||||| |||||||| ||||| Sbjct 526 GAAGTGGAACCATCAGATACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGA 467 Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || ||||| |||||||| ||| | || | ||| ||||| ||||| ||||| || || Sbjct 466 ATTCCACCAGATCAACAACGTCTTATTTTCGCTGGCAAGCAATTAGAAGATGGTCGTACA 407 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 | ||||||||||||||||||||||| || || | |||||||| | ||| | || ||| Sbjct 406 TTATCCGATTACAACATTCAAAAGGAATCCACACTTCATTTGGTACTTCGTCTTCGTGGT 347 Query 27213 GGCAT 27217 || || Sbjct 346 GGTAT 342 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| | ||||| ||| | ||||| | ||||||||||| || Sbjct 115 ATGCAGATCTTTGTAAAAACCTTAACCGGTAAGACAATTACCTTGGAAGTGGAACCATCA 56 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 || | ||||||| |||||| ||||| |||||||| ||||| || ||||| Sbjct 55 GATACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGAATTCCACC 3 >seq105237 Length=11214 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| |||| |||||| | || || ||||| || ||||| || Sbjct 8883 ATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCATCA 8942 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| |||||||| || |||||||| || ||||| |||||| Sbjct 8943 GATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGATCAA 9002 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||||||||| ||||| | || | || |||||||| Sbjct 9003 CAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTACAAT 9062 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| ||||||||||| | ||| | || ||||| || Sbjct 9063 ATCCAAAAGGAGTCGACATTACATTTGGTGCTCCGTCTCCGTGGTGGTAT 9112 >seq98090 Length=13235 Score = 154 bits (170), Expect = 1e-32 Identities = 314/460 (68%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 135308 GTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCAT-AGA 135366 || || |||||||| | || || ||||| || || || |||| |||||| || | ||| Sbjct 10702 GTACGGCGCGAATTATCTGATAACTTTTGCTACTACAATGAACACTATGATAGCCTTAGA 10761 Query 135367 AGGTGCTCCGGCATGGGCG-CAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACT 135425 ||| || | |||||| | |||| |||| | | ||| ||| |||| | Sbjct 10762 GGGTTATCAAAC-TGGGCGGCTACAA-CTTTAAATGATCATAAAAAGGATAAACGAGAAT 10819 Query 135426 TTTGTTACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGG 135485 || ||||| || | | ||| || | || ||| ||||| || ||||| || | Sbjct 10820 ATTTGTACACATCGGACGAGTTGGAAAAATCATTAACGTATGACGATTTATGGAATGCAG 10879 Query 135486 CACAACGGCA---GCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGG 135542 | ||| || | |||| || || |||||||| ||||||||||| |||||||||| Sbjct 10880 CTCAATTACAATTGGTTAAT---GAGGGGAAAATGCATGGATTTATGCGAATGTATTGGG 10936 Query 135543 CAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTT 135602 | ||||| || | |||||| ||| | || | ||| || || | | || || | || Sbjct 10937 CGAAAAAAATCCTCGAATGGACTGAAAGTCCAGAAGAAGCTCTCCGAATTGCTATCTATT 10996 Query 135603 TTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGT 135662 | |||||| || |||||||| ||| | ||| | |||||||| || || |||||||||| Sbjct 10997 TAAATGATCGATATAGTTTAGACGGAAGGGATCCTAATGGCTATGTGGGCTGTATGTGGT 11056 Query 135663 CTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCT 135722 | ||| | || | ||||||||||||||| || || | ||||| || || |||| Sbjct 11057 CAATTGGTGGAATCCACGATCAAGGATGGGCTGAACGGCCCATTTTTGGTAAAATACGCT 11116 Query 135723 ATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 ||||| ||| || |||| | |||| ||| ||||||| Sbjct 11117 TCATGAATTATAGTGGATGTAAACGAAAGTTTGATGTAAA 11156 >seq53184 Length=5087 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| | |||||| | ||||| ||||| |||||| | ||||| | || ||| Sbjct 5082 ACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAAGCC 5023 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || ||||| |||||||| |||||||| |||||||| |||||||| | || || ||| Sbjct 5022 AAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTAAA 4963 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||||||||||| || || | ||||| |||||||| |||||||| || || | ||| Sbjct 4962 CAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTTCAT 4903 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || ||||| || Sbjct 4902 TTGGTACTTCGTCTTCGTGGTGGTAT 4877 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||| | || || || | || || | || || ||||||||| Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || |||||||| ||||| || || | || ||||||||| Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGGTAT 4649 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | || || || | || || | || || |||||||| Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| |||||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 || |||||||| | |||||||||||| | ||||| | ||| || |||| || ||||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGA-TGGGCGAACGCTTTCTGACTACAA 4472 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||| ||||| || | ||||| || || ||| | || || ||| Sbjct 4471 TATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGGC 4423 >seq47011 Length=3271 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||||||||| || || || ||| | || || ||||| || || || || Sbjct 1688 CATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATC 1629 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 1628 CGATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCA 1569 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| |||||||| | ||| || |||||||||||||| | ||| | || |||||||| Sbjct 1568 ACAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAA 1509 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | ||||| || | ||| | || || || Sbjct 1508 TATCCAAAAGGAATCCACACTTCATTTAGTGCTCCGTCTTCGTGGCGG 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433931107373552