Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq77412 111 1e-19 seq47011 102 6e-17 seq105237 98.7 7e-16 seq53184 93.3 3e-14 >seq77412 Length=2780 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||||||||| || ||||| | || || || || || |||| || ||| | || Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| |||||| |||||| ||||||||||| |||| || | Sbjct 283 GACACAATTGAAAAT--GTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATC 226 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| |||||||| ||||||||||| || | || | || |||||||||| Sbjct 225 AACAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACA 166 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || | ||||||||| | ||| | ||||| || Sbjct 165 ACATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGTCTTCGTGGTGG 117 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| ||||| ||||| || ||||||||||| || | || | || ||||| |||||| Sbjct 736 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTATCCGACTACAAC 677 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || |||| | |||||||| | ||| | ||||| ||| Sbjct 676 ATCCAAAAGGAATCCACTCTCCATTTGGTACTTCGTCTTCGTGGTGGC 629 >seq47011 Length=3271 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| ||||| || || || || |||| || || || Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 1627 GATACTATCGAAAAT--GTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATC 1570 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| |||||||| || || ||||||||||| || | || | |||||| ||||||| Sbjct 1569 AACAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACA 1510 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||| || ||| | ||||| || | ||| | |||||||| Sbjct 1509 ATATCCAAAAGGAATCCACACTTCATTTAGTGCTCCGTCTTCGTGGCGG 1461 >seq105237 Length=11214 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 ||||||||||| ||||| ||||| | || || || || || |||| |||||| | Sbjct 8880 AAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCA 8939 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || | ||| |||||| ||||| || ||||||||| |||| | Sbjct 8940 TCAGATACAATTGAAAAT--GTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAG 8997 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| | |||||||| || |||||||| || || | | | ||||| |||| Sbjct 8998 ATCAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATT 9057 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||| || || |||||||| | ||| | ||||| || Sbjct 9058 ACAATATCCAAAAGGAGTCGACATTACATTTGGTGCTCCGTCTCCGTGGTGG 9109 >seq53184 Length=5087 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || ||| | ||||| ||| || ||| | || || ||| || Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| || |||||||| |||| || | Sbjct 4818 GATACCATTGAGAAT--GTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATC 4761 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| || |||||||| || || | || | ||||| ||||||| Sbjct 4760 AACAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACA 4701 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | || ||||| | ||| | ||||| || Sbjct 4700 ACATCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGG 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355051957190928