Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq47011 140 7e-28 seq53184 138 3e-27 seq77412 109 1e-18 seq184144 102 2e-16 >seq47011 Length=3271 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| ||||| || |||||||| || ||||||| | ||| Sbjct 1466 ACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGT 1525 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || ||||| || | |||||||| || || |||| || Sbjct 1526 ACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCC 1585 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || || || |||||||| || || || |||||||| || Sbjct 1586 TTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAG 1645 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || |||||||| | ||||| Sbjct 1646 GGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq53184 Length=5087 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||||| || ||||||||||| || || || || | ||| || Sbjct 4430 CGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTT 4489 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||| ||||| ||||| || | ||||||||||| || |||| |||| Sbjct 4490 CGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCT 4549 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || ||||| || ||| || || || ||||| ||||| ||||||||| | Sbjct 4550 TCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAAT 4609 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | |||||| || || | ||||| Sbjct 4610 GTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| || ||||||||||| ||||||| | || | |||||| Sbjct 4667 AGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCT 4726 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | || || || || ||||| | |||||||| || || |||| |||||| || || Sbjct 4727 TCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCT 4786 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || || || ||||| || || ||||||||| | ||||| || Sbjct 4787 TGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTT 4846 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||||||| || | ||||| Sbjct 4847 TTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || || || ||||||||||| || || | | || Sbjct 4885 ACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGT 4944 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || || ||||| | |||||||| || || || | ||| Sbjct 4945 ACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCC 5004 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || |||||||| ||| |||||||| |||||||| || ||| || || | Sbjct 5005 TTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAA 5064 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||| || ||||| || || Sbjct 5065 AGTAATTGTCTTACCGGT 5082 >seq77412 Length=2780 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| ||||| || ||||| ||||| ||||| | | || Sbjct 350 ACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGATAATGT 409 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | |||||||| ||||| ||||| |||||||| || || |||| ||| Sbjct 410 ACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCC 469 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 ||||||||| ||||| || ||| || || || || || || || Sbjct 470 TTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTATCTGA 514 >seq184144 Length=1006 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 210958 CATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017 ||||||| || || || ||||| || |||||||||||||| || || ||| || || || Sbjct 425 CATCTTCAAGTTGTTTACCTGCAAAAATAAGGCGTTGTTGATCCGGTAGAATTCTTTGCT 366 Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 | || || ||||| | ||| | ||| |||||| || || ||| || | ||||| | Sbjct 365 TTTCTTGAATCTTGTTTTTGATTATTTTGATGGTATCGGATGGTTCTACTGCTAGAGTAA 306 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 | || ||||| || | ||| |||||||| | ||||||| || Sbjct 305 TTGTTTTTCCTGTTACAGTGTTTACAAAGATCTGCATTCTA 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156376764077360