Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq53184 84.2 2e-11 >seq53184 Length=5087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 ||||||||| ||| || | | ||||| || ||||| || || ||||||||| || Sbjct 4413 AAATTTATTG--GCCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAAT 4470 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| || || | ||| ||||| | || || ||||||||||| || || || | ||| || Sbjct 4471 ATTGTAGTCAGAAAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTG 4530 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||||| | || | | ||||| || |||||| ||||| || | | ||||| Sbjct 4531 TTGGTCTGGTGGAATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATC 4590 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || | ||||| |||| || || | || || || || |||||||| Sbjct 4591 AGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428567350702832