Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq77412 163 2e-35 seq105237 122 6e-23 seq47011 120 2e-22 seq53184 116 2e-21 >seq77412 Length=2780 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | || || || || |||||||| ||||| || | | Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| ||||||||||| | || ||||||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| |||||||| |||||| ||||||| | || || ||| |||||||||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || ||| | ||||| ||| Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGTT 134 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || ||||||||||| ||| | || || || ||||| ||| | ||| Sbjct 478 GACAAGGAAGGAATTCCACCAGATCAACAACGTCTTATTTTCGCTGGCAAGCAATTAGAA 419 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | || || ||| |||||||||||| ||||| || |||||| | ||||| || Sbjct 418 GATGGTCGTACATTATCCGATTACAACATTCAAAAGGAATCCACACTTCATTTGGT 363 >seq105237 Length=11214 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | ||||| || || ||||| || || || || | Sbjct 8880 AAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCA 8939 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | ||| |||||| || ||||||||| | || |||||| Sbjct 8940 TCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGAT 8999 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||| | || ||||| ||||||||| | ||||| | | || || |||||| Sbjct 9000 CAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTAC 9059 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| ||||| ||||||||||| || Sbjct 9060 AATATCCAAAAGGAGTCGACATTACATTTGGT 9091 >seq47011 Length=3271 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| || |||||||| || || || || || ||||| | | Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | || ||||| ||||||||||| | || ||||||||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| || || || |||||| ||||||| | || || || |||||||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || |||||| | |||||||| Sbjct 1507 ATCCAAAAGGAATCCACACTTCATTTAGT 1479 >seq53184 Length=5087 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| ||||| | || ||||| | | Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| |||||| || |||||||| | || ||||||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| || |||||| | ||||| | || || || ||||||||| Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || |||||| | || || || Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGT 4670 Score = 114 bits (126), Expect = 9e-21 Identities = 158/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| ||||| | || ||||| | | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | |||| | || |||||||| | || ||||| || Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAA-TCCAAGATAAAGAAGGAATTCCACCAGACCA 4532 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 ||| |||||||| || ||||||||||| || ||||| ||||||| | | || | Sbjct 4531 ACAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCT----GACT 4476 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 |||| || ||||||||||| ||| | |||||||| ||| Sbjct 4475 ACAATATTCAAAAAGAGTCTACACTTCATTTAGTATTA 4438 Score = 109 bits (120), Expect = 4e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || || || || ||| | ||||| || | | ||||| |||||| ||||| Sbjct 5082 ACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAAGCC 5023 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || || |||||||| |||| ||||||||||| |||||||| ||||| || ||| Sbjct 5022 AAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTAAA 4963 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||| ||||||| | || || ||| ||| |||||||| ||||| || || ||| | ||| Sbjct 4962 CAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTTCAT 4903 Query 23815 TTAGT 23819 || || Sbjct 4902 TTGGT 4898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337239815246912