Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq105237 149 1e-30 seq77412 143 6e-29 seq47011 140 8e-28 seq53184 136 9e-27 seq172423 131 4e-25 seq76417 89.7 1e-12 >seq105237 Length=11214 Score = 149 bits (164), Expect = 1e-30 Identities = 155/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||||| ||||||||| | ||| ||||| |||||||||| || || || Sbjct 9079 GTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTCTAATTGTTTGCCT 9020 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || || |||||||| || || ||||||||||| || || || || ||| |||| Sbjct 9019 GCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGAAT-TTTAGCTTT 8961 Query 225637 -ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || ||||| | ||| || || | ||||| |||||||||||||| || Sbjct 8960 GACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTCAATGT 8901 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||||| || | ||||||||| Sbjct 8900 TTTTACAAAGATTTGCATTTT 8880 >seq77412 Length=2780 Score = 143 bits (158), Expect = 6e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || ||||||||||| | |||||||||| || || Sbjct 122 ACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGT 181 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || || ||||| | |||||||| || || ||||| || Sbjct 182 ACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCC 241 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||||||||| |||||| || ||| ||| || |||||||| | ||| || || | Sbjct 242 TTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAA 300 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || || ||||||| ||| | |||||| Sbjct 301 GAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 131 bits (144), Expect = 4e-25 Identities = 139/181 (77%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || |||||||| ||||| | |||||||||| || || Sbjct 350 ACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGATAATGT 409 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| ||||| |||||||| ||||| |||||||| || || ||||| || Sbjct 410 ACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCC 469 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| ||| || || ||| || || || ||||| | |||||| || | Sbjct 470 TTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCCACTTCCA 528 Query 225671 A 225671 | Sbjct 529 A 529 >seq47011 Length=3271 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || |||||||| ||||||| ||||||||| | ||| || Sbjct 1466 ACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGT 1525 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| | || || |||||||| || | |||||||| || || ||||| || Sbjct 1526 ACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCC 1585 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || ||| ||| |||||| || || || | || || || | Sbjct 1586 TTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAG 1645 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||| | ||||||| || | |||||| Sbjct 1646 GGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq53184 Length=5087 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || |||||||| | |||||| || | | |||| ||||||||||||||| Sbjct 4448 TGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTCTAGCTGT 4507 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || | ||||||||||| || ||||| ||||| || |||||||| ||| Sbjct 4508 TTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGGAT-TTT 4566 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| || ||||| || || | ||| || ||||| ||||| || || || || Sbjct 4567 GGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTTACCAGT 4626 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| | |||||| Sbjct 4627 TAAAGTCTTGACGAAAATTTGCAT 4650 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || ||||| ||||||| ||||| |||| || || Sbjct 4885 ACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGT 4944 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||| ||||| | |||||||| || || || || || Sbjct 4945 ACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCC 5004 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||||||||| || || ||| |||||||| || | ||| || || || Sbjct 5005 TTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAA 5064 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 || || ||||| || || || Sbjct 5065 AGTAATTGTCTTACCGGTTAA 5085 >seq172423 Length=1738 Score = 131 bits (144), Expect = 4e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || |||||| | || || ||||| ||| |||| ||||| ||| | ||||| Sbjct 1537 CCAAATTTATAATGTTATTGTAACAGCTCATGCATTTATTATAATTTTTTTTATAGTTAT 1478 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || ||||||||||| || |||||||| | || || || || Sbjct 1477 ACCTATTATAATTGGAGGATTTGGAAATTGATTAGTCCCTTTAATACTAGGAGCCCCAGA 1418 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||||||||||||| | | || ||||| |||||||| || |||| || ||| Sbjct 1417 TATGGCTTTTCCACGAATAAATAATATGAGTTTTTGGATATTACCCCCATCC 1366 >seq76417 Length=4238 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| || || || || || || ||||| || || || ||||| || |||||||| Sbjct 1254 AAAATTTGTCCGTCTGTGATTGAAATGACATTAGTTGGAATGTAAGCTGATACATCACCA 1195 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||||| || ||||| ||||||| ||| ||||| || Sbjct 1194 GCTTGTGTTTCGATTACTGGTAAAGCTGTTAATGAACCACCTCC 1151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189676047763616