Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq105237 109 4e-19 seq77412 86.0 5e-12 >seq105237 Length=11214 Score = 109 bits (120), Expect = 4e-19 Identities = 158/224 (71%), Gaps = 12/224 (5%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || || || || || ||||| ||||||||||| | || ||| || |||||| Sbjct 9092 CACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTC 9033 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||||||||||| ||| | || || | |||||| ||| || | |||||||| || Sbjct 9032 TAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 8973 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGAC------GGTAAT 101202 |||||| ||| |||| | | || ||| | || |||||| ||| || Sbjct 8972 AATTTTAGCTTTGACATTTTCAATTGTATCT------GATGGTTCGACCTCAAGGGTGAT 8919 Query 101203 AGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAA 101246 || ||||||||||||||||| | ||| ||||||||| | |||| Sbjct 8918 GGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTTGACAA 8875 >seq77412 Length=2780 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATTGTTTGC 101099 || |||||||||||||| |||||||||| ||| | | || ||||||||||||||| | Sbjct 147 GTAGATTCTTTTTGAATGTTGTAATCGG--ATAATGTACGACCATCTTCCAATTGTTTAC 204 Query 101100 CCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTT 101159 | ||| | || | | |||||| ||| || | ||||||||||| |||||| || Sbjct 205 CGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTTGCTT 264 Query 101160 TCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTTTGCCCGTCAA 101217 | |||| | | || |||| | ||| | ||| | || || || || || || || Sbjct 265 TGACATTTTCAATTGTGTCTGATG--GTTCTACTTCAAGAGTGATTGTCTTACCGGTTAA 322 Query 101218 TGTTTTAATAAAAATTTGCAT 101238 ||||| | ||||||||||| Sbjct 323 GGTTTTTACGAAAATTTGCAT 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408727836445776