Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq115302 241 1e-58 seq90443 89.7 4e-13 >seq115302 Length=2783 Score = 241 bits (266), Expect = 1e-58 Identities = 385/548 (70%), Gaps = 10/548 (2%) Strand=Plus/Plus Query 4538 AAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGA 4597 ||||| | ||||||||||||||| || || ||||||||||| || |||||||| || Sbjct 1755 AAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGTTCGTTCGA 1814 Query 4598 AAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCC 4657 ||| || || || ||||| | || | ||||| | ||||||||| | || || ||| Sbjct 1815 AAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCGAAACTCCC 1874 Query 4658 AGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGG--ACCCGAACGAGCTG 4715 | |||||| || ||||| || || || || || | |||| | ||| || || | Sbjct 1875 ACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAA-TAATACGTTCACCAAAATTCGCCG 1933 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 |||| | |||||||| || ||||||| |||||| || || || || || | || Sbjct 1934 A-TTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGTAAAGTT 1992 Query 4776 TATATAGCGTTAAATAAT---TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATT 4832 | | || || ||||| | || | || ||| ||| | ||||| || || ||| Sbjct 1993 TCAACGGCATTGAATAAAAAGTCACGCTCTTT---TGGATCTCGGATATACGTATCAATT 2049 Query 4833 AGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCAT 4892 || || || ||||| || ||||| | |||||| || ||||| ||||| ||||| || || Sbjct 2050 AGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAACAA 2109 Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952 | ||||| |||| ||||||||| | | || | ||| ||||| ||||||||||| ||| Sbjct 2110 CGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACAATA 2169 Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA 5012 || ||| ||||| ||||| || | || || || ||||||| |||| || || Sbjct 2170 CCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGTTTT 2229 Query 5013 AGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGAC 5072 ||| | ||| | | || ||||| | || |||||||||||| | |||||||| || Sbjct 2230 AGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAATGAT 2289 Query 5073 GCTTCCGC 5080 |||||||| Sbjct 2290 GCTTCCGC 2297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| |||| || ||||||| ||| |||||||||||||| |||||||| || || Sbjct 1443 AACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAA 1502 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || |||||| || | || ||||| | | |||||| ||||||| | Sbjct 1503 TGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAA 1562 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | || || || ||||| ||||| || ||||| || ||| | ||| || || || Sbjct 1563 TTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAATTCAT 1622 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTAT 4474 |||| | | || || | || | ||| |||||||||||||| || Sbjct 1623 ACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 >seq90443 Length=2238 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31777 AACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGG 31836 ||| ||||||||||| ||||| ||| || ||||| || || || ||| | || || Sbjct 1778 AACAGATATTCAAATCCAATTACCCGAAGGATGTTACGGTCGTATCGCACCTCGTTCCGG 1719 Query 31837 ATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGG 31896 ||||||| ||| | ||||| || || || || |||||| ||||| ||||||| | || Sbjct 1718 GTTGGCAGCCAAAAATTTTATTGATGTTGGAGCTGGTGTTGTAGATGAAGACTATCGTGG 1659 Query 31897 AAACGTTGGAATTGTGTTGTTTAA 31920 ||| | || |||| |||||||| Sbjct 1658 AAATTTAGGTGTTGTTTTGTTTAA 1635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426077035105712