Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq146712 526 3e-144 seq115302 284 2e-71 >seq146712 Length=6971 Score = 526 bits (582), Expect = 3e-144 Identities = 1149/1716 (67%), Gaps = 61/1716 (4%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || || |||||||| ||||| |||||||||| |||| |||| || || ||| Sbjct 2411 GCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAA 2470 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || || || || ||| | || ||||||| || ||||| | ||| || ||| Sbjct 2471 TGAATAGAAGTTAGCTTTCCGTAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTT 2530 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| || ||||| || | ||| || ||||| || || | || || | | |||| Sbjct 2531 TGATCTATAAAAGCACCACGATCCGCGGCCATCTTAATTAGCGTTTTAACTGACACTTCC 2590 Query 76983 CAAATAGTTTTGAAAA------------CTTGTTTGATATCATC------------TGGA 77018 || | ||||| ||| |||| ||| || || || | Sbjct 2591 CATACTGTTTTATAAAGACCACGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTGAA 2650 Query 77019 AGGTTTG-------------TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 |||| |||||||||| ||||| | | |||| ||| || Sbjct 2651 CCATTTGCCGCAATANTCAATATTTTGAATTAAACCATTTACCGCAATAACGCGATTTTT 2710 Query 77066 TATATCATCATTCCACA-ATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTA 77124 ||| ||||||| ||||| || | | || ||||| | | | | ||| | || |||| Sbjct 2711 TATGTCATCATCCCACAGATCTAAT-TCGGTTAAGTCCTTTATCAAATGGTGGTTTACTA 2769 Query 77125 TTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 77184 ||||||||| ||||| | ||| | | || || | || ||||| ||||| | || Sbjct 2770 CTTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGTATAGGGTTCGAAAG 2829 Query 77185 ATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAAC 77244 ||||||| |||||||||||||| || ||||||||||| ||||| || || | | | | Sbjct 2830 ATTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAG 2889 Query 77245 TATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 |||||| | ||||| | |||||| | || | |||||||||| | ||||| Sbjct 2890 AATTTCTAACTCCATGCTTCGCGATTTTTGCCTTCAACGCGGTCCAATCCCATAAATCTG 2949 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTAT 77364 || || ||| | ||| || || | || || ||||| | ||| | || Sbjct 2950 TTGGAGTTTTATTCCACATATCATACTGCAAGATGCCTTTACTTACTGGACTTCCTTCAT 3009 Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 ||||||| || | ||| | ||||||||||||| ||||| ||||| ||||| ||||| | Sbjct 3010 ATGTTTCGTAGGTGCCTAATTTTTCAGCTAGTTCGCAACTAGCTTCTAATGCACCGTAGT 3069 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484 | ||||| |||||||| | || || | |||||| || ||| ||| | | |||| Sbjct 3070 ATATTGTCTCGAAAATTTGCTGGTTTAATAATTGTGCCTCTTCACTTTCATATGCATAAC 3129 Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 77544 | | | || || ||||| || | || || || ||||| ||||| |||| ||||||| Sbjct 3130 GCATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGTCTCA 3189 Query 77545 TATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGAT 77604 |||||||| ||| ||||| || || ||||| ||||||| || || |||||||| | || Sbjct 3190 TATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTTAAAT 3249 Query 77605 TTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA---TCTTCCAT--- 77658 || | || | |||| || || || | || |||||| | | || ||| Sbjct 3250 TTTTTGTCACAATTTTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAA 3309 Query 77659 CTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGT 77718 | | |||||||| || | || || || |||| ||||||||| ||||| |||| | Sbjct 3310 CATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCAT--CTTT 3367 Query 77719 TG--GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 || | | ||| || || |||||||| | ||| |||||| || || || | |||||| Sbjct 3368 TGACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATATTTTG 3427 Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 ||| ||| ||| ||| || | || ||||| || ||| ||||| || ||||||| Sbjct 3428 TTGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTTTCAAC 3487 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTG-TATCGCC 77895 || ||| ||||||| | ||| | || | | ||| | | | | | | || | Sbjct 3488 TTGACTTTCAATAATAGCATACCATA-GAGATTGGGCTTTCACTTTGCGTAGAAAACGGC 3546 Query 77896 TCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 || |||||||||| |||||| ||||||||||||||||||| ||| | | | Sbjct 3547 CTTCGCTTTCATATTTCTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGAC 3606 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 |||| ||||| | || ||||| || ||||| || ||| | | | ||| || ||||||| Sbjct 3607 CAGGACATTCGTGAGGACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAA 3666 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 | | || ||||||||||| ||| ||| | |||||||| ||| ||| || || |||| Sbjct 3667 ATAAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTG 3726 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||| || || | ||| ||||| || | ||||||| |||||| ||||||||||| || | Sbjct 3727 TATTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGG 3786 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | || || ||||| ||||| || ||||| | || | || || ||||| || | Sbjct 3787 CAAATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACA 3846 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 |||| |||| || | || || ||||| | |||||||| || | |||||| ||| Sbjct 3847 CTCTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCT 3906 Query 78256 TTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 |||| |||||| |||| | || ||||| |||||||| || || |||| Sbjct 3907 TTGCTCGAATA----CAATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAAT 3962 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGTTAAGAAG 78370 || || ||||||||||||| || ||||| || ||||| || ||| || |||||| || Sbjct 3963 GCACATTGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAACAA- 4021 Query 78371 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 ||| || || | || | || ||||| || ||| | || || || ||||| Sbjct 4022 AAAGCATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATG 4081 Query 78431 CGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTC 78466 || || || |||| || | || |||||| ||||| Sbjct 4082 AGTGAAATATCTTTCCGATAATAAATTGTACGTTTC 4117 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATT 78550 |||||| || | || || ||||| | |||||||||||||||||| | | || || Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAATTTTTCGTTT 4570 Query 78551 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 ||||||||||| || ||| |||||| |||||||| |||||||| ||||| ||| || Sbjct 4571 AATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAATC 4630 Query 78611 TCTCTCGTAAATAATAACAGAATTTA 78636 | || ||||| ||| | ||||||| Sbjct 4631 ACGATCATAAATTATAGCTGAATTTA 4656 >seq115302 Length=2783 Score = 284 bits (314), Expect = 2e-71 Identities = 394/551 (72%), Gaps = 3/551 (1%) Strand=Plus/Plus Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 |||||||||||||| | ||| ||||||||||| || | ||||| ||||| |||| | Sbjct 1747 AAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGT 1806 Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| |||||||| | ||| ||||| || ||||||||||| | ||||||||| | ||| Sbjct 1807 TCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCG 1866 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||| ||| |||||| || ||||| || || || ||||| ||| | || || || Sbjct 1867 AAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAAA 1926 Query 48303 CTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | || || | | ||||| || | ||||| ||||| ||||| |||||||| || Sbjct 1927 TTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGT 1986 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 | ||||| | ||||| || | ||||| || || |||| | || ||||| Sbjct 1987 AAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCA 2046 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 |||| |||||| ||||| ||||| |||| |||||| || || || ||||| ||||| ||| Sbjct 2047 ATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAA 2106 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | ||||| || || || || || | || |||||| | ||||| || ||||| Sbjct 2107 CAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACA 2166 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || |||||| || || |||||||| | ||| || |||||| | ||| | Sbjct 2167 ATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGT 2226 Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 | ||| || ||| ||| || |||||||||| || ||||||||||||||||||||| Sbjct 2227 TTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAAT 2286 Query 48660 GATGCCTCTGC 48670 ||||| || || Sbjct 2287 GATGCTTCCGC 2297 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 |||||||| || ||| |||||||| |||| ||| ||||| ||||| |||||||| Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 ||||||||||| |||||| || | |||||||| | || |||||||||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || ||||| | | | ||| || || || || |||||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGAT 48067 ||||| || | | || ||||| | || || || | |||||||||||| || Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693046192616960