Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq146712 590 9e-164 seq115302 266 5e-66 seq5594 87.8 3e-12 >seq146712 Length=6971 Score = 590 bits (654), Expect = 9e-164 Identities = 1156/1710 (68%), Gaps = 49/1710 (3%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||| || || |||||||| ||||| |||||||||| |||| |||| || || ||| Sbjct 2411 GCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAA 2470 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||||| || ||| | || ||||||| || ||||| | ||| || ||| Sbjct 2471 TGAATAGAAGTTAGCTTTCCGTAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTT 2530 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || ||||| || | ||| || ||||| || || | || || | | |||| Sbjct 2531 TGATCTATAAAAGCACCACGATCCGCGGCCATCTTAATTAGCGTTTTAACTGACACTTCC 2590 Query 75578 CAAATAGTTTTGAAAA------------CTTGTTTGATATCATC------------TGGA 75613 || | ||||| ||| |||| ||| || || || | Sbjct 2591 CATACTGTTTTATAAAGACCACGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTGAA 2650 Query 75614 AGATTTG-------------TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||||| |||||||||| | || | | |||| ||| || Sbjct 2651 CCATTTGCCGCAATANTCAATATTTTGAATTAAACCATTTACCGCAATAACGCGATTTTT 2710 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || ||||||| ||||| | | |||||||| | | | | ||| | || || | Sbjct 2711 TATGTCATCATCCCACAGATCTAATTCGGTTAAGTCCTTTATCAAATGGTGGTTTACTAC 2770 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||||||||| ||||| | ||| | || || || | || ||||| ||||| | ||| Sbjct 2771 TTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGTATAGGGTTCGAAAGA 2830 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 |||||| |||||||||||||| || || |||||||||||||| || || | | | | Sbjct 2831 TTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGA 2890 Query 75841 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 |||||| | ||||| | |||||| | || | |||||||||| | ||||| Sbjct 2891 ATTTCTAACTCCATGCTTCGCGATTTTTGCCTTCAACGCGGTCCAATCCCATAAATCTGT 2950 Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATA 75960 ||| || ||| | ||| || || | || || || || | ||| | ||| Sbjct 2951 TGGAGTTTTATTCCACATATCATACTGCAAGATGCCTTTACTTACTGGACTTCCTTCATA 3010 Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATA 76020 ||||||||| || || |||||||||||||||||||| || ||||| |||||||| || Sbjct 3011 TGTTTCGTAGGTGCCTAATTTTTCAGCTAGTTCGCAACTAGCTTCTAATGCACCGTAGTA 3070 Query 76021 AATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATG 76080 ||||| |||||||| | || || | ||| || || ||| ||| | | |||| | Sbjct 3071 TATTGTCTCGAAAATTTGCTGGTTTAATAATTGTGCCTCTTCACTTTCATATGCATAACG 3130 Query 76081 TAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 | | || |||||||| || | || || || ||||| ||||| |||| ||||||| | Sbjct 3131 CATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGTCTCAT 3190 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||||||| || ||||| || || || || ||||||| ||| || |||||||| | ||| Sbjct 3191 ATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTTAAATT 3250 Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC--TATC 76258 | | || | |||| || || || | ||| |||||| ||||| || || | Sbjct 3251 TTTTGTCACAATTTTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAAC 3310 Query 76259 A----CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATT 76314 | |||||||||| || || || || |||| ||||||||||||||| |||| || Sbjct 3311 ATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCATCTT--TT 3368 Query 76315 GGC--ATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 | | | ||| || || || || || | ||| ||| || || || || | ||||||| Sbjct 3369 GACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATATTTTGT 3428 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 || ||| ||| ||||| | || ||||| || | | ||||| ||||||||||| Sbjct 3429 TGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTTTCAACT 3488 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTC 76492 || ||| ||||||| | ||| | | ||||| | | | | | || Sbjct 3489 TGACTTTCAATAATAGCATACCATAGAGATTGGGCTTTCACTTTGCGTAGAAAACGGCCT 3548 Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 || |||||||||| ||||| ||||||||||||||||||| ||| | | |||| Sbjct 3549 TCGCTTTCATATTTCTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCA 3608 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 |||||||| | |||||||| || ||||| || ||| | | | ||| || |||||||| Sbjct 3609 GGACATTCGTGAGGACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAAT 3668 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 | || ||||||||||| ||| ||| | |||||||| ||| ||| || || |||||| Sbjct 3669 AAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTA 3728 Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 || || || | ||| || || || | ||||||| |||||| ||||||||||| || || Sbjct 3729 TTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCA 3788 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | | || || ||||| ||||| || ||||| | || | ||||| ||||| || ||| Sbjct 3789 AATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACT 3848 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 || |||| || | || || ||||| |||||||||| || | |||||| ||| | Sbjct 3849 CTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTT 3908 Query 76853 GCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAG 76912 || |||||| | || | |||||||| |||||||| ||| || |||| ||||| Sbjct 3909 GCTCGAATACAATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACAT 3968 Query 76913 CGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGAAGAAAACA 76971 |||||||||| ||||| || || || |||||||| ||| || |||||| || ||| || Sbjct 3969 TGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAACAA-AAAGCA 4027 Query 76972 GCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 || | || | || ||||| || ||||| || || || ||||||||||| Sbjct 4028 TGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAA 4087 Query 77032 CCATTTTTCAGAAAGTAGATTGTATGTTTC 77061 || |||| || | || |||||| ||||| Sbjct 4088 ATATCTTTCCGATAATAAATTGTACGTTTC 4117 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATT 77145 |||||| || | ||||| ||||| | |||||||||||||| ||| || | || || Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAATTTTTCGTTT 4570 Query 77146 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 ||||||||||| || ||| |||||| |||||||| |||||||| ||||| ||| || Sbjct 4571 AATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAATC 4630 Query 77206 TCTTTCGTAAATAATAACCGAATTTA 77231 | || ||||| ||| | ||||||| Sbjct 4631 ACGATCATAAATTATAGCTGAATTTA 4656 >seq115302 Length=2783 Score = 266 bits (294), Expect = 5e-66 Identities = 393/552 (71%), Gaps = 5/552 (1%) Strand=Plus/Plus Query 46612 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAAT 46671 |||||||||||||| | ||| ||||||||||| || | ||||| ||||| |||| | Sbjct 1747 AAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGT 1806 Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| |||||||| | || ||||| || ||||| ||||| | ||||||||| | ||| Sbjct 1807 TCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCG 1866 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 ||| ||| |||||| || ||||| || || |||||||| | || | || || || Sbjct 1867 AAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAAA 1926 Query 46792 CTGGCATCATTA--TGAA-TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | || || |||| |||| | | ||||| ||||| || || |||||||| || Sbjct 1927 TTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGT 1986 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 | ||||| | ||||| || | ||||| || | |||| | ||| ||||| Sbjct 1987 AAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCA 2046 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 |||| |||||| ||||| || ||||||| ||||| || || || ||||| ||||| ||| Sbjct 2047 ATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAA 2106 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028 || | |||||| || || || || ||| | || |||||| ||||| || || || Sbjct 2107 CAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACA 2166 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT-CGGT 47087 || |||||| || || |||||||| | ||| || |||||| | |||| |||| Sbjct 2167 ATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGT 2226 Query 47088 AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAA 47147 | ||| || ||| ||| || |||||||||| || ||||||||||||||||| || Sbjct 2227 TTT-AGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Query 47148 TGACGCCTCTGC 47159 ||| || || || Sbjct 2286 TGATGCTTCCGC 2297 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 |||||||| || ||| || ||||| | || ||| ||||| ||||| |||||||| Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443 ||||||||||| |||||| || | || ||||| | || |||||||||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503 || ||||| | | | ||| || || || || ||||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAAT 46556 ||||| || | | || || || | || || || | ||||||||||||||| Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 >seq5594 Length=5961 Score = 87.8 bits (96), Expect = 3e-12 Identities = 166/240 (69%), Gaps = 11/240 (5%) Strand=Plus/Plus Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTT 76959 |||| ||||| |||||||||| ||||| || || || |||||||| ||| ||| ||| Sbjct 5707 ATTAATGCACATTGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTT 5766 Query 76960 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGA 77019 || || ||| || || | || | || ||||| || ||||| || || || Sbjct 5767 AACAA-AAAGCATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGA 5825 Query 77020 TGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTC-TATAT 77078 ||||||||||| || |||| || | || |||||| ||||| || | | || | || Sbjct 5826 GGCATGAGTGAAATATCTTTCCGATAATAAATTGTACGTTTCCATTGCATCATCATTCAT 5885 Query 77079 CCCATT----GATGAATTCCTACAGCGACACGCATCA----ACATATGCTGAGGTCGTTC 77130 | ||| |||||| || | |||||| ||||| | |||||||||| |||| ||| Sbjct 5886 TCAATTTCGCCATGAATACCAATAGCGACTCGCATAAGCATACATATGCTGGGGTCTTTC 5945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711269127828480