Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq77412 122 2e-22 seq53184 111 4e-19 >seq77412 Length=2780 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| ||||| |||||||| ||||||||||||| ||| || | |||||| Sbjct 132 AGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCT 191 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||| ||||| | | || || || | | |||||||| || ||| Sbjct 192 TCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 251 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || |||||| ||||||| | || | ||||||| |||||||||||||| || || Sbjct 252 TGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTC 311 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | || || ||||| | ||||| Sbjct 312 TTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || || || ||||| ||||||||||||| ||| || | |||||| Sbjct 360 AGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGATAATGTACGACCATCT 419 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || ||||| ||||| | || || || | | ||||||||||| ||| Sbjct 420 TCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCT 479 Query 152013 TGAATTTTTTGTTTGACAGTCTC 152035 || ||||| ||||||| |||| Sbjct 480 TGGATTTTAGCTTTGACATTCTC 502 >seq53184 Length=5087 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| |||||||||||||| || ||||| || | | |||| |||||||||||| Sbjct 4447 ATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTCTAGCTG 4506 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| |||||||| || | | || ||||| | | |||||||| || ||||| ||||| Sbjct 4507 TTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGGATTTT 4566 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| |||| | | | || || || || || | || || ||||| || || Sbjct 4567 GGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTTACCAGT 4626 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||| | ||||| Sbjct 4627 TAAAGTCTTGACGAAAATTTGCAT 4650 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || ||||||||||||||||| | || || | |||||||||| Sbjct 4672 CAAG-TGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCTA 4730 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | | || || || | | |||||||| || ||||||| Sbjct 4731 ATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAA 4790 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | | | || || || || || | || || ||||| | Sbjct 4791 TTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTAC 4850 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||| | ||||| Sbjct 4851 CAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151058328009744