Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq105237 136 3e-27 seq77412 114 1e-20 seq47011 102 7e-17 seq53184 98.7 8e-16 >seq105237 Length=11214 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||| ||||| ||||| ||||| ||||| ||||| ||| | || ||||| Sbjct 8880 AAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCA 8939 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| | ||| | || ||| |||||| || |||||||| |||| ||| Sbjct 8940 TCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGAT 8999 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | || |||| ||| ||||||||||| |||||| | ||| || | ||||| Sbjct 9000 CAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTAC 9059 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| || || ||| ||||||| ||| | ||||| || ||||| Sbjct 9060 AATATCCAAAAGGAGTCGACATTACATTTGGTGCTCCGTCTCCGTGGTGG 9109 >seq77412 Length=2780 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| || ||||| || || || || | ||| ||||| Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| |||||| ||||||||||| |||| |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||| | | || | ||| || ||||||||||||||| || | | ||| ||||||| | Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTAT--CCGATTACA 166 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||||||||||||| ||||| || | ||||| || ||||| Sbjct 165 ACATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGTCTTCGTGGTGG 117 >seq47011 Length=3271 Score = 102 bits (112), Expect = 7e-17 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| | || || || ||||| ||| | || || || | Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || || ||||| ||||||||||| |||| |||||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| || || ||||||||||||||| || || | ||||| ||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC---GCGGTGGCAATAAA 111333 || ||||| ||||| ||||| ||||||||| | ||||| | |||||| ||| ||| Sbjct 1507 ATCCAAAAGGAATCCACACTTCATTTAGTGCTCCGTCTTCGTGGCGGTGCCAAGAAA 1451 >seq53184 Length=5087 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| ||||| || || || || ||||| || || | || ||||| Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| ||||| || |||||||| |||| || ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| || |||||||| | |||||| ||| | | || || ||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATAAAT 111334 || |||||||| |||||||| |||||||| || ||||| ||||| || |||||||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGGCCAATAAAT 4415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || || || || || ||||| || || | || ||||| | Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| |||||| || |||||||| |||| |||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| || |||||||| |||||| | || || | ||||| || Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| ||||| || || || | ||||| || ||||| Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGG 4652 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 111121 TTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAA 111180 || ||||| || || ||||| ||||| ||||| ||| | ||| | |||||| Sbjct 5085 TTAACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAA 5026 Query 111181 CAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGC 111240 || || || |||||||| | || ||||||||| | | || | ||| || Sbjct 5025 GCCAAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGT 4966 Query 111241 AAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACAC 111298 ||||||||||||||| || | | ||| |||| || || || ||||| |||||||||| Sbjct 4965 AAACAATTGGAAGATGGTCGTACATTAT--CCGACTACAACATCCAAAAGGAATCTACAC 4908 Query 111299 TACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | ||||| || | ||||| || ||||| Sbjct 4907 TTCATTTGGTACTTCGTCTTCGTGGTGG 4880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420850565064064