Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq77412 178 3e-39 seq53184 159 7e-34 seq47011 122 2e-22 seq64780 86.0 1e-11 seq24381 86.0 1e-11 seq20119 86.0 1e-11 seq11180 86.0 1e-11 seq7360 86.0 1e-11 >seq77412 Length=2780 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | || ||||||||| |||||||| || | Sbjct 116 ACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGA 175 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| ||||||||||| ||||||||||| || || Sbjct 176 TAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGG 235 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||||||||| |||||||| || | || || ||||| || | ||| || Sbjct 236 AATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTAC 295 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| |||||||| || || || || ||||| || ||||| Sbjct 296 TTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || |||||||||| ||| | ||| ||| ||||| |||||||| || | Sbjct 344 ACCACCACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGA 403 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| |||| ||| || || || || || | ||||||||| || || Sbjct 404 TAATGTACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGG 463 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||| || ||||| || | || || || || || | ||| || Sbjct 464 AATTCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCCAC 523 Query 283052 TTC 283054 ||| Sbjct 524 TTC 526 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || |||||||||| ||| | ||| ||| ||||||||||||||||| | Sbjct 630 CCACCACGAAGACGAAGTACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAT 689 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 | || || ||||| || | |||||| || |||||||| |||||||||| Sbjct 690 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTT 738 >seq53184 Length=5087 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || |||||||||| || | ||| ||| |||||||||||||| || | Sbjct 4651 ACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGA 4710 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| |||| |||||| || |||||||| ||||||||||| || || Sbjct 4711 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGG 4770 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || || ||||| || || |||||||| | || || || || || | ||| || Sbjct 4771 AATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAAC 4830 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || ||||| || |||||||| ||||| || ||||| Sbjct 4831 CTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || |||||||||| ||| | || ||| ||||||||||||||||| | Sbjct 4879 ACCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGA 4938 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || |||||||| ||||||||||| || || Sbjct 4939 TAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGG 4998 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || || ||||||||||| ||||||||| | || || ||||| || | ||| || Sbjct 4999 TATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTAC 5058 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAA 283078 ||| | ||| || |||||||| || || Sbjct 5059 TTCCAAAGTAATTGTCTTACCGGTTAA 5085 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || |||||||||| |||||| || ||||| ||||| ||||| ||||| || Sbjct 4460 TCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAA 4519 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || |||||||||||||| ||||| || || || |||||||| || ||||| || | Sbjct 4520 ATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTC 4579 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || || | ||| || || | ||||| || ||||| || |||||||| ||| Sbjct 4580 TCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACG 4639 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 4640 AAAATTTGCAT 4650 >seq47011 Length=3271 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||| ||||| || || || || | ||| | ||| ||| |||||||| ||||| || | Sbjct 1460 ACCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGA 1519 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || || ||||| || | |||||| || || || || ||||||||||| || | Sbjct 1520 CAAG-GTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTG 1578 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || || ||||||||||| || || || || | |||||||| || || | || | Sbjct 1579 GAATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAA 1638 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || ||||| ||||| | || || || || || ||||| Sbjct 1639 CCTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq64780 Length=6030 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2546 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2602 >seq24381 Length=11196 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 4463 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 4407 >seq20119 Length=8179 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 4172 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 4228 >seq11180 Length=6947 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 717 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 773 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1080 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1136 >seq7360 Length=8995 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 7341 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 7397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044233102241056