Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq115302 237 2e-57 seq29734 82.4 8e-11 >seq115302 Length=2783 Score = 237 bits (262), Expect = 2e-57 Identities = 381/543 (70%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 23490 TAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAA 23549 ||||| ||||||| | ||| ||||||||||| |||| ||||| || || || | Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 23550 TTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609 ||| || |||||||| || |||||||| | || |||||||| | ||||||||| | || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 23610 AAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669 || || ||||||||| || || || || || || || | || |||| |||||| Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 23670 TGTTGC--ATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727 | || ||| | |||||||||| | | ||| | ||| ||| ||||||||| Sbjct 1926 ATTCGCCGATTTGCTT--GAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACAT 1983 Query 23728 TCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTT-TCTTCATTATCTGTTATATATGT 23786 | ||||||| || || || | |||||| |||| |||| ||||| || Sbjct 1984 GGTAAAGTTTCAACGGCATTGAATA-AAAAGTCACGCTCTTTTGGATCTCGGATATACGT 2042 Query 23787 ATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATA 23846 ||||||||| | ||| ||||| || ||||||| |||||| || ||||| |||||||| || Sbjct 2043 ATCAATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTA 2102 Query 23847 AAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTT 23906 ||||| | ||||| | | |||||| || | || | || | ||||||||||||| Sbjct 2103 GAAACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTT 2162 Query 23907 AACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 |||||||||||| || || || || ||||| || | ||||| || | |||| Sbjct 2163 TACAATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGA 2222 Query 23967 AGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCA 24026 | | || | | ||||||| || |||||||||| |||||||| ||| ||||||| Sbjct 2223 CGGTTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCA 2282 Query 24027 AAA 24029 ||| Sbjct 2283 AAA 2285 >seq29734 Length=3068 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| ||||| || ||||| |||||||| ||| ||||||| | |||||||| || || Sbjct 1171 GGTGTACTACACACGAAATTATGGATTGTGGATGGTAAACATTTTTATATTGGCAGCGCG 1112 Query 139489 AACATGGACTGGCGATCACTAAC 139511 || |||||||||||||| |||| Sbjct 1111 AATATGGACTGGCGATCGTTAAC 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520269908329600