Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq47011 89.7 4e-13 seq53184 87.8 1e-12 >seq47011 Length=3271 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 44135 TGAAGCGTGCTCTCCTTTTGGATGTTGTAAT-CGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193 ||||| ||| ||||||||||| ||||||| || | || | ||| | || |||| || Sbjct 1485 TGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGT-ACGCCCATCTTCCAATTG 1543 Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 || || || || || ||||| || ||||||| || | ||||| || || || || Sbjct 1544 TTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTGGATTTT 1603 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | || | || || |||| | || ||||| | || || ||||||||||| Sbjct 1604 AGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTTTCCCGT 1663 Query 44314 GAGGGTCTTCACGAAGATTTGCATGATG 44341 || || || || ||||||||||||||| Sbjct 1664 AAGTGTTTTTACAAAGATTTGCATGATG 1691 >seq53184 Length=5087 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||||||||||||||||| | | | || | || || Sbjct 4670 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCT 4729 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || |||||||| ||||| || ||||||| || | |||| |||| | | Sbjct 4730 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTT-CTTTATCTTG 4788 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || |||| | ||| | ||||| |||| | ||| ||||| | || || || || Sbjct 4789 AATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTT 4848 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| |||||||| Sbjct 4849 ACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359170556063088