Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq123327 120 4e-22 >seq123327 Length=3505 Score = 120 bits (132), Expect = 4e-22 Identities = 208/297 (70%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 156171 CGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACT 156230 |||| || ||||||||||||||||| ||||| || | ||| | | ||| || ||||| Sbjct 1417 CGTCGTACATTAGCTTCCGATTCACCTACATACTTATCTAAAATCTGAGGGCCATTAACA 1476 Query 156231 ATTTTGACGGGTC--GTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTA 156287 ||||| || || ||| ||| || | ||| |||| | |||||||| |||||| Sbjct 1477 ATTTTT--GGTTCCCGTGCATTCAACATTTTGC-CGATTTGTCTTGCCATTAAAGTTTTA 1533 Query 156288 CCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAATTTTTCA 156347 || || || |||||||||||||| | ||||| | |||||||| ||||||| |||| Sbjct 1534 CCAGTGCCTGGCGGTCCGTATAACAAAATACCTTTAACGTGTTTACACCCTAATTGTTCA 1593 Query 156348 GTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCT 156407 | ||| |||| | | |||||||| || | ||||| || | ||||||| Sbjct 1594 ACAACTTCCGGTGGAAATACGCGAGAAGCAAAAGCACGACGAAATATCGCATTAAATTCT 1653 Query 156408 TTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAATTT--ATAGATATTTGAC 156462 ||||| | || || | ||||||| |||||| ||||| | || |||| | ||| Sbjct 1654 TTATCTAGACCACCAATCCCCATTTTTCCAAAATCCCAATCTGGATTGATAATAGAC 1710 Score = 104 bits (114), Expect = 3e-17 Identities = 223/327 (68%), Gaps = 20/327 (6%) Strand=Plus/Plus Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789 ||| ||| || || || || || || |||||||| ||||| |||||||| || ||| || Sbjct 942 CGATTCATGGCTGTAGACTGTGCAGCACGTACCAAACCTTCTAATTCAGCACCACTGAAA 1001 Query 155790 TTTTTAGTT----TCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTG 155845 ||||| ||| | | ||| ||| ||| || || || | | |||| | | | Sbjct 1002 TTTTTTGTTAGTGTAGAAAGCTCTTTA--TTA--TCAACATCAGGAT-TAATTT--TCTT 1054 Query 155846 AGATT---TCATT---TTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATC 155899 | ||| ||||| || | | || | |||||||||||| |||| |||| ||| | Sbjct 1055 AAATTCTCTCATTCTTTTCGTA---TGTATATTTAAAATTTGATGACGTCCCTCTTCGTT 1111 Query 155900 GGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAAT 155959 |||||||||||||| || | || |||||| || || ||||| | | ||||| ||||| Sbjct 1112 TGGTAATCCAATTTCCATTTGCACTTCCAATCGACCGGGTCTCATCAGCGCTTCATCAAT 1171 Query 155960 TAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTC 156019 | || ||| || ||||| || || | |||||| || || | ||| || ||||| Sbjct 1172 CATATCACGTCGATTAGTCATTCCGATAACTAAAATATTATTAAGTTGTTCGACTCCGTC 1231 Query 156020 TATTTTAGACAATAATTGATTGACTAC 156046 || |||| | || ||||| || || Sbjct 1232 AATCTTAGCTAGTAGCTGATTAACAAC 1258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665517045747840