Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq77412 143 6e-29 seq53184 143 6e-29 seq47011 114 3e-20 seq184144 87.8 4e-12 seq1971 84.2 5e-11 >seq77412 Length=2780 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || ||||| || || || ||| |||||| Sbjct 340 CAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCAGAC 281 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||| || || |||||||||||||| || || || || ||| Sbjct 280 ACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAACAA 221 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| | |||||||| | || | ||||||| ||| | Sbjct 220 CGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAACATT 161 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| ||||| ||| | ||| Sbjct 160 CAAAAAGAATCTACACTTCATTTGGTT 134 >seq53184 Length=5087 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || ||||| ||||| | ||||| ||| || || Sbjct 4647 CAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCTGAT 4588 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| || || || || ||||||||||| || || ||||| ||| Sbjct 4587 ACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAACAA 4528 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| |||||||| |||||||| | || ||| | || || || | Sbjct 4527 CGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAATATT 4468 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||||||| || ||||| ||| | || || Sbjct 4467 CAAAAAGAGTCTACACTTCATTTAGTATT 4439 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || ||||| ||||| | ||||| ||| || || Sbjct 4875 CAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCCGAT 4816 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| || ||||| || ||||||||||| || || || || ||| Sbjct 4815 ACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAACAA 4756 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | |||||||| | || | | ||||| ||| || Sbjct 4755 CGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAACATC 4696 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| ||||| || |||| Sbjct 4695 CAAAAGGAATCCACACTTCA-CTTG 4672 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || || || | || || ||| || |||||||| || ||||| ||| Sbjct 5082 ACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAAGCC 5023 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || || ||||||||||| || || || || ||||| | ||||| || || ||| Sbjct 5022 AAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTAAA 4963 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | |||||||| | || | |||| || ||| ||||||| ||||| ||||| ||| Sbjct 4962 CAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTTCAT 4903 >seq47011 Length=3271 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || ||||| || || ||||| ||||| || || || Sbjct 1684 CAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCCGAT 1625 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || || || ||||||||||| || || || || || ||| Sbjct 1624 ACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAACAA 1565 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || ||||| || ||||| | |||||||| | || |||| | ||||| || | Sbjct 1564 CGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTAC-CTTGTCGGATTACAATAT 1506 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||| ||||| ||||| ||| Sbjct 1505 CCAAAAGGAATCCACACTTCAT 1484 >seq184144 Length=1006 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | ||||||||||| || || || | || ||| || || Sbjct 272 CAGATCTTTGTAAACACTGTAACAGGAAAAACAATTACTCTAGCAGTAGAACCATCCGAT 331 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||| | | ||||| | |||||||| || || || |||| | ||||| || ||| Sbjct 332 ACCATCAAAATAATCAAAAACAAGATTCAAGAAAAGCAAAGAATTCTACCGGATCAACAA 391 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || ||||| || || || ||||| || ||||||| | || || |||| ||||| Sbjct 392 CGCCTTATTTTTGCAGGTAAACAACTTGAAGATGAACAAACAATTTCCGACTATAA 447 >seq1971 Length=4725 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||| | ||||||||||| || || || | || ||| || || ||||| | | || Sbjct 546 ACTGTAACAGGAAAAACTATTACTCTAGCAGTAGAACCATCCGATTCCATCAAAATAATC 605 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 ||| | |||||||| || || || |||| | || || |||||||| ||||| || || Sbjct 606 AAAAACAAGATTCAAGAGAAGCAAAGAATTCTACCAGATCAGCAACGCCTTATTTTTGCA 665 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 || ||||| || ||||||| | || || |||| |||||| | | | | ||||||| Sbjct 666 GGTAAACAACTTGAAGATGAACAAACAATTTCCGACTATAACATTCGATCAAAATCAAC 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200849232779616