Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq53184 95.1 1e-14 >seq53184 Length=5087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| |||||||| || | ||| || || ||| || ||||| || ||||| || Sbjct 4423 GCCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGA 4482 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || ||| | || || ||||| ||||||||||| || | || |||||||| | || Sbjct 4483 AAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGG 4542 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCA 41813 || | || ||| | || |||| |||| || | | || || || || | Sbjct 4543 AATTC-CTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAA 4601 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || |||||||| || | ||||| |||||||| ||||| Sbjct 4602 CCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461224150316800