Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5098 116 3e-21 >seq5098 Length=3754408 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || ||||||| |||||| || || || |||||||| | ||| || | Sbjct 2898783 CTTTGTATTCAGCACCAAAATGCCGCCACTGGAAACCGTAGACAGGTCCTAAATCACCCT 2898724 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| ||| |||||| ||| || || | | || ||||| ||||||||| Sbjct 2898723 CCTCTCTATCAGTGAAACCACAGGAATCCAAGAAAGCCCGTGAACCATTTTCATCCCAAA 2898664 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACA 102212 || | | || | || | |||||| | || |||||| ||||||||||||| | Sbjct 2898663 TGCGAATACCCTTATCCGACAATTCTTTGGAATTTGTCGATCCTTTGATAAACCACAATA 2898604 Query 102213 GTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 |||||||||| || ||| ||| || ||| ||||| || || | |||||| Sbjct 2898603 GTTCTTCAACCACTGCTCGCCAGAACACTTGTTTAGTTGTCAATAATGGAAA 2898552 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| |||||| |||||| | ||||| || || ||||| |||||||| Sbjct 2899170 AGTAACATGAGCGATCATGTAAGTTAGCAAGGAATATGACGCTATATTAAACGGCACTCC 2899111 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 ||| ||||| || || ||||||||| || || ||| | | ||| | | || || Sbjct 2899110 TAAACCCATGTCTGCGCTTCTTTGATAAAGCTGCGTGGACAATTCTCCGTTATTCACGTA 2899051 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC---ATT 101928 |||||| | || || || |||||||| |||| || | ||| || ||| ||| Sbjct 2899050 AAATTGTATGAAAGTGTGGCACGGCGGCAATGCCATCTTTGAAATATC---AACTGGATT 2898994 Query 101929 CCAAGCACACATTAACATCCTTCTATC 101955 ||| || |||||| || | ||| || Sbjct 2898993 CCAGGCTGACATTATAATACGTCTGTC 2898967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361225505556836