Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5665 102 1e-16 seq5738 86.0 7e-12 >seq5665 Length=3828390 Score = 102 bits (112), Expect = 1e-16 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 53044 AAGGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 ||||| | || | |||| ||||||| || | | ||| ||||| || || || | Sbjct 3267786 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 3267844 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||||| ||| ||||||| ||| | | ||||||||| || | ||||||||| Sbjct 3267845 CCATAGACCTCTACTGGTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCC 3267904 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 ||||||||| | || || ||||| || ||||||||||| | || || ||||| || Sbjct 3267905 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 3267964 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 |||||||| || || || || || ||||||||||| Sbjct 3267965 TAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGC 3268000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 187/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 |||| | || ||||| || || | |||| | ||||| |||| || || ||||| | Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 54456 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 | ||||| || ||| || || || ||| || || || || || || || || | Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATCTCATTT 3269674 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 | |||||| || || || || | ||| ||||| || ||||| || || || ||||| Sbjct 3269675 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 3269734 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || |||||||||| || | | || | ||||||||||||| ||| || || ||| Sbjct 3269735 TTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAA 3269794 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATC 54669 || || ||||| || ||| | || | ||||| || Sbjct 3269795 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 ||||||||| || ||| || ||||||||||||| || |||||| |||||| ||| Sbjct 3268926 GTATACAATTCTTTAAATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGA 3268985 Query 53999 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 54057 ||||| | |||| ||| |||||| | || |||| |||||| ||||| || ||||| Sbjct 3268986 CACATTAGGCTCCACATCT-CGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCA 3269044 Query 54058 AAGAGCTATAAATAGATCTCT 54078 ||| | ||||| |||||| Sbjct 3269045 TAGACCGTAAAATAAATCTCT 3269065 >seq5738 Length=4927432 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | ||| ||||| | ||||||||||| |||| || |||||||| |||| Sbjct 2905061 CACTAAAAACTTTCTTTGTCTGCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 2905002 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| |||||||| || | | | ||||| |||| |||| || | |||| Sbjct 2905001 TTGCATAATCTGGATGTTGATTAATCATAATCGCTGCAGTTTCAGCTGCCAAGTTATCCA 2904942 Query 54888 ATTCTACCGTTGTTACTCCA 54907 |||| ||||| |||||| Sbjct 2904941 ATTCGCTTGTTGTCACTCCA 2904922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678288009280