Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq5634 114 1e-20 seq5320 87.8 2e-12 >seq5634 Length=4821945 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | || || ||||||||||| |||| ||| | | Sbjct 1938704 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 1938645 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | | ||| ||||| ||||||||||| | || ||||| Sbjct 1938644 AGACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGATCA 1938585 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | || || || |||||||||||||||||| || |||| | |||||||||| Sbjct 1938584 ACAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAA 1938525 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||| ||||| || |||||| |||| | || | |||||||| Sbjct 1938524 TATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 1938477 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | || || ||||| ||||| |||| ||| | | Sbjct 1938476 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTC 1938417 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||||| || |||||||| | || ||||| Sbjct 1938416 AGATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCA 1938357 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | || || || || |||||||||||||||||| || |||| | | |||||||| Sbjct 1938356 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 1938297 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| || || ||| | || |||||| | || ||||| Sbjct 1938296 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 1938249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || | ||||| |||||||| ||| |||| ||| | | Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| |||||| |||||||| || | ||| ||||| Sbjct 1939327 GACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCAG 1939268 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || || ||||| ||||| ||||| |||||| || |||| | | ||||||||| Sbjct 1939267 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAAT 1939208 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| || |||||| |||| | || | |||||||| Sbjct 1939207 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGG 1939161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || || |||||||| ||| || |||| | | Sbjct 1939615 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 1939556 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || ||||||||| | || |||||| Sbjct 1939555 GACACTATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 1939496 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || |||||||| || ||| || |||| | | || ||||| Sbjct 1939495 CAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 1939436 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| ||||| | || | || |||| ||||| Sbjct 1939435 ATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTACGTGGAGG 1939389 >seq5320 Length=807335 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||||||||| || || || ||||| || ||| || | || Sbjct 502107 ATGCAAATTTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCA 502166 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| |||||| || |||||||| | ||| ||||| Sbjct 502167 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 502226 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || ||| | ||||| || || |||||||| |||||| || | ||| | | || |||| Sbjct 502227 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTT--CTGACTACA 502284 Query 29140 ATATTCAGAAGGAATCTAC 29158 ||||||| ||||||||||| Sbjct 502285 ATATTCAAAAGGAATCTAC 502303 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| ||||||| |||| || || ||||| || ||| || | | Sbjct 501650 AATGCAAATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTC 501709 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || | ||| |||||| || |||||||| | ||| ||||| Sbjct 501710 CGACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCA 501769 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 || ||| | ||||| || || |||||||| |||||| || | ||| | | || ||| Sbjct 501770 GCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTT--CTGACTAC 501827 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| ||||| || | || |||| | || ||||| || || Sbjct 501828 AATATTCAGAAAGAATCCACATTGCATTTGGTTCTCCGTTTACGTGGTGG 501877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| |||||||| || || ||||| || ||| || | | Sbjct 502791 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 502850 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| |||||| || || ||||| | || |||||| Sbjct 502851 GACACGATCGAGAATGTTAAAGCCAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAG 502910 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | ||||| || || |||||||| |||||| || | ||| | | ||||||| Sbjct 502911 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGTACACTTT--CTGATTACA 502968 Query 29140 ATATTCAGAAGGAATCTAC 29158 |||||||||||||||| || Sbjct 502969 ATATTCAGAAGGAATCCAC 502987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| | || || ||||| ||||| || || | || Sbjct 503019 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 503078 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| |||||| ||||||||||| | || |||||| Sbjct 503079 GACACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 503138 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || || |||||||| || || |||||| ||| | |||| || ||| Sbjct 503139 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAAT 503198 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| || ||||| ||||| Sbjct 503199 ATTCAGAAAGAGTCTACACTTCA 503221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428305534066580