Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5320 113 4e-20 seq5634 82.4 6e-11 >seq5320 Length=807335 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | |||| |||||| ||||| || ||||||||||| ||||| | Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || |||||||| || || | || | ||||||||| ||| || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||| || | ||| ||| || | ||| | Sbjct 502441 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACT 502382 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || ||||| |||||||| || |||||||| Sbjct 502381 TCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||||| || || ||||||||||| |||||||| | || || | |||| Sbjct 502775 GAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTC 502716 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || || ||||| || || | || | |||||||||||| || | ||||||||||| Sbjct 502715 TTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC 502656 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-TTTCCACGGTAATGG 21141 || || ||| || | ||| || || | ||| || ||||| ||||| | Sbjct 502655 TTGAATTTTGGCTTTGACATTCTCGATCGTGTC-CGACGCTTCGACTTCCAGAGTAATTG 502597 Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || ||||| | |||||||||||| |||||||| Sbjct 502596 TTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||||| ||||| || || ||||| || ||||| | || || || | || Sbjct 502091 GAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATC 502032 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || |||||||| || || | || | ||||||||| ||| || | ||||||||||| Sbjct 502031 TTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTC 501972 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 || || ||| || | ||| ||| || | ||| ||||| || || || Sbjct 501971 TTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGT 501912 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || || || ||||| || |||||||| Sbjct 501911 CTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 >seq5634 Length=4821945 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| || | || |||| ||| | || || || ||||| ||||||||||||| Sbjct 1938703 TTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCG 1938762 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || ||||||| | |||||| || ||| | || | | |||||||| | Sbjct 1938763 AGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAG 1938822 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||| ||||| |||||| ||| || | | | || ||| || || Sbjct 1938823 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 1938882 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || ||||| || ||||| | ||||| || || ||||||||| Sbjct 1938883 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229166286576