Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5634 122 9e-23 seq4085 109 6e-19 seq5320 104 2e-17 seq4511 104 2e-17 >seq5634 Length=4821945 Score = 122 bits (134), Expect = 9e-23 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| |||||||| ||||| |||||| | || || ||||| | Sbjct 1939160 AATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 1939101 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | || | || || | |||||||| ||||| || | ||||| Sbjct 1939100 TGACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 1939041 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 |||||| | |||| ||| || |||||| |||| |||| || ||| |||| ||||| Sbjct 1939040 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCA--GACTAT 1938983 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| || |||| || || || || |||| Sbjct 1938982 AACATCCAGAAAGAATCCACACTTCACCTGGTTCTGCG 1938945 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| ||||| || |||||||||||| | || || ||||| | Sbjct 1939615 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 1939556 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | |||||||| || || || | || ||| Sbjct 1939555 GACACTATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 1939496 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || ||||| || || || | | || || ||||||||| Sbjct 1939495 CAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 1939436 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| | ||||| ||||| || |||| Sbjct 1939435 ATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCG 1939401 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || ||||||||||| | || || |||||| | Sbjct 1938932 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 1938873 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | || || | |||||||| ||||| || | |||| Sbjct 1938872 TGACACAATAGAAAACG-TAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACC 1938814 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| | |||| || || |||||| | || |||| | || ||| ||||| | Sbjct 1938813 AGCAACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGGACTATA 1938754 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || || | || || ||| | || |||| Sbjct 1938753 ACATCCAAAAAGAATCTACCCTTCATTTGGTTCTGCG 1938717 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || || ||||| |||||||||||| |||| |||||||| | Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | |||| ||||||| || |||||||| || ||| |||| || Sbjct 1939327 GACACCATTGAAAACG-TAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCA 1939269 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||| || || || || | | || ||| || ||||| Sbjct 1939268 GCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAA 1939209 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 || || || || |||| || || Sbjct 1939208 TATTCAAAAAGAATCCACACTTCA 1939185 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || ||||| || || |||| |||||||| | Sbjct 1938476 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTC 1938417 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | |||| ||||| | |||||||| || || || |||| || Sbjct 1938416 AGATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCA 1938357 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| |||||||| ||||| || | | || || || ||||| Sbjct 1938356 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 1938297 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || |||| || || |||| || || Sbjct 1938296 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACG 1938261 >seq4085 Length=6844556 Score = 109 bits (120), Expect = 6e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| ||||| || ||| |||| || || ||| | Sbjct 2742835 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACTATTACCCTCGAGGTAGAGGCCTCT 2742776 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| ||||| || || | || || Sbjct 2742775 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCACCAGATCAA 2742716 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| |||||||||||||| || | ||||| | || |||||| Sbjct 2742715 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCTGATTACAAC 2742656 Query 40870 ATCCAGAA 40877 ||||| || Sbjct 2742655 ATCCAAAA 2742648 >seq5320 Length=807335 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| || || || || |||||||| | || || || || | Sbjct 501422 AATGCAGATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTC 501481 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||||||| |||||||| || |||||| |||| || Sbjct 501482 GGACACGATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCGGATCA 501541 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || || || || || | ||||| || |||||||| Sbjct 501542 GCAGAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACACTTTCTGACTACAA 501601 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| || |||| ||||||| || Sbjct 501602 CATTCAGAAAGAATCCACATTGCATCTGGT 501631 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || || |||||||| | || || || || | Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | ||||||| ||||| || || ||||| |||| ||| Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || |||||||| || || | ||||| || ||||||||| Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || || || ||||| ||||| | || ||| Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTG 502547 >seq4511 Length=1767931 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || || ||||| || ||||| ||||||| ||||||||||| ||||| |||||| Sbjct 464673 GTCGCATTTGCGGCGGTTGAGGGTATCTTCTTCAGTGGCAGTTTCGCAGCCATTTTTTGG 464614 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || |||||||| || ||||||| || || || ||||||||||| || ||||| | ||| Sbjct 464613 CTAAAGAAACGAGGAGTCATGCCAGGTCTCACCTTCAGCAACGAACTTATCTCGCGAGAC 464554 Query 117164 GA 117165 || Sbjct 464553 GA 464552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515181614759360