Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5634 131 1e-25 seq4085 125 6e-24 seq5320 120 3e-22 >seq5634 Length=4821945 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| || ||||||||||| |||||||| | ||| | ||| || Sbjct 1939179 ACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTCA 1939238 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| | || |||||||||||||| || || || ||||| || ||| | Sbjct 1939239 AGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTGA 1939298 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | ||| | |||||||| ||| ||||| |||| ||| | ||||| Sbjct 1939299 ATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCT-TCGACTTCGAGGGTGATGGTTTT 1939357 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || ||||| |||||||| ||||||||| || Sbjct 1939358 ACCCGTAAGAGTCTTTACAAAGATCTGCATGCCT 1939391 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || || || ||||||| ||| || |||||||| ||||||||||| Sbjct 1938247 TACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAG 1938306 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| | ||| || || ||||| || ||| | || |||||||| ||||| || | Sbjct 1938307 AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 1938366 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || ||||| ||||| || || | ||||| ||| || | ||| ||| Sbjct 1938367 GAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCT-TCG 1938425 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || | |||||| ||||| |||||||| || || || ||||| Sbjct 1938426 ACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| || | ||| | |||||| || ||||||||| Sbjct 1939419 GTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGTTTTCCA 1939478 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | ||| |||||||| ||||| || || || |||||| ||||| ||| Sbjct 1939479 GCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCTTTG 1939538 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| ||||| | ||| || ||||| | ||| | ||||| || || || || Sbjct 1939539 ACATTCTCGATAGTGTCAGAAGCT-TCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGT 1939597 Query 118721 TTTTACAAAAATCTGCATG 118739 ||||||||| || |||||| Sbjct 1939598 TTTTACAAAGATTTGCATG 1939616 >seq4085 Length=6844556 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| ||||||||||| || |||||| |||||| |||||||| || ||| ||| Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| ||||| ||||| || || || ||||||||||| || || || || | | Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 2742765 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| || | | ||| ||||||| ||| | ||||| || || || ||||| || | Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 118729 AAATCTGCATGG 118740 | |||||||||| Sbjct 2742826 AGATCTGCATGG 2742837 >seq5320 Length=807335 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | ||||| ||||| || | || || ||||||||||||||||| || Sbjct 502563 TACCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAG 502504 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| |||||||||||||| ||| |||| | | ||||||||| || | Sbjct 502503 AAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTG 502444 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| |||||| |||||| | |||| ||||| | ||| | Sbjct 502443 GGATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAA 502384 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || | ||||| || ||||| ||||| Sbjct 502383 CTTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | |||||||||||| ||||| || || ||| | ||| || ||| || | Sbjct 503226 CAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCTTCTA 503167 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| | || || | || ||||||||||| ||||| || || ||| || Sbjct 503166 GCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAA 503107 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | ||||| ||||| | ||||||||| | || | ||||| | Sbjct 503106 TTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAATAGTTTTAC 503047 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||||||| |||||||||||||| Sbjct 503046 CAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || ||||| | ||||| || | ||||| || || ||||| |||||||| | Sbjct 501421 CCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGAC 501362 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| || ||||| |||||||| |||| | |||||||||||| || || Sbjct 501361 AAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGA 501302 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||| || || ||| ||| || | |||| ||||| | ||| || Sbjct 501301 ATGCCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACT 501242 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || | || | || || || |||| || || |||||||||||||||| Sbjct 501241 TCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATGG 501193 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| || | ||| || ||||| ||||||||||| || | ||||| ||| || Sbjct 501631 ACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCA 501572 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| |||| | | ||||||||| || || || || || |||||| | Sbjct 501571 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCTTGA 501512 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | |||| ||||||| ||| || || | || | || || Sbjct 501511 ATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGGTCTTT 501452 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| || ||||||||||| Sbjct 501451 CCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | || || ||||| ||||| ||||| || Sbjct 502107 TACCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAG 502048 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| |||||||||||||| ||| |||| | | ||||||||| || | Sbjct 502047 AAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTG 501988 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| |||||| |||||| | |||| ||||| | ||| | Sbjct 501987 GGATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAA 501928 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || |||| || || || ||||| ||||| Sbjct 501927 CTTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || ||||| ||||| ||||| || Sbjct 501879 TACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAG 501820 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || || |||||||||||| |||| | | ||||||||| || | Sbjct 501819 AAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGG 501760 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| |||||| || || | |||| ||||| | ||| | Sbjct 501759 GAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAA 501700 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || ||||| ||||| || ||||| ||||| Sbjct 501699 CTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || |||||||| ||||| || | ||||| ||| || Sbjct 502315 ACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 502256 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||||||| |||| | | ||||||||| || || || || || |||||| | Sbjct 502255 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGA 502196 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| ||||| | ||| || || | || | || || Sbjct 502195 ATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTTT 502136 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| |||||||| ||||| Sbjct 502135 CCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433799543270512