Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5320 123 4e-23 seq5634 116 6e-21 seq5499 105 1e-17 >seq5320 Length=807335 Score = 123 bits (136), Expect = 4e-23 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||||| |||||||| ||| || ||||| || || ||||| || | | ||| || Sbjct 502315 ACCAAATGTAAGGTAGATTCCTTTTGA-ATATTGTAGTCAGAAAGTGTGCGACCATCTTC 502257 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 502256 AAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTG 502197 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 || ||||| || ||||| || ||||| || || Sbjct 502196 AATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTT 502137 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||||||||| | || |||||||| Sbjct 502136 TCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || |||||||| ||||| || || ||||| || | | ||| || Sbjct 501859 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 501800 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 501799 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTG 501741 Score = 107 bits (118), Expect = 3e-18 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| || || |||||||| || || |||||||| || || || || ||| Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | |||||||| || || |||||||| ||||||||||| || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| ||| ||||| || ||| Sbjct 502441 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACT 502382 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||||| || || |||||||||||||| | ||| |||||||| Sbjct 502381 TCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 105 bits (116), Expect = 1e-17 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || |||||||| ||||| || || ||||| || | || ||| || Sbjct 502087 ACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCG 502028 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||| || || |||||||| ||||||||||| || |||||||| || ||||| Sbjct 502027 AGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGA 501968 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| ||||| || ||||| || |||||||| || Sbjct 501967 ATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTT 501908 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| ||||| || | ||| |||||||| Sbjct 501907 CCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||||||||||| | ||| | ||| | ||||| ||||| |||||||| || || Sbjct 503246 TCCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGA 503187 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| |||| || || || || ||||||| |||||| ||||| ||||| Sbjct 503186 TAAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGG 503127 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||||||||||| Sbjct 503126 AATGCCTTCTTTATCTTG 503109 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| || || |||||||| || || || || ||||| || | | ||| || Sbjct 501631 ACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCA 501572 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| |||||||| || |||||||| ||||||||||| || ||||||||||| ||||| Sbjct 501571 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCTTG 501513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | | ||| | |||||||| | ||||||||| || ||||| ||||| | Sbjct 501423 TTCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAG 501364 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | || ||||||||||| ||||| | |||||||| || | Sbjct 501363 ACAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTG 501304 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| ||||| || Sbjct 501303 GAATGCCTTCCTTATCCTG 501285 >seq5634 Length=4821945 Score = 116 bits (128), Expect = 6e-21 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | |||| || | || |||||||| ||||| ||||| | Sbjct 1938475 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGG 1938534 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||||| ||| || | |||||| || || |||||||| | || |||||||| | Sbjct 1938535 AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTG 1938594 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||||||||||||||| || |||||| ||| | Sbjct 1938595 GAATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGA 1938654 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || || || |||||||| || | ||||| | ||| ||||||||| Sbjct 1938655 CTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 Score = 113 bits (124), Expect = 7e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 |||||||| || || || || || ||||||||||||| ||| |||| |||||||||| Sbjct 1939419 GTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGTTTTCCA 1939478 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| | ||||||||| |||||||| |||||||| ||||| Sbjct 1939479 GCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTG 1939525 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | ||||| || | || |||||||| ||||| ||||| | Sbjct 1939159 TTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAG 1939218 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | |||||||||| ||| || | ||| || ||||||||||||| | ||||||||||| | Sbjct 1939219 AGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGG 1939278 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| ||||||||||| Sbjct 1939279 GAATTCCCTCTTTATCTTG 1939297 Score = 109 bits (120), Expect = 8e-19 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| ||| || || || | || |||||||| || || ||||| ||| Sbjct 1938249 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 1938308 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| ||| || | |||||| || || ||||||| | || |||||||| ||| Sbjct 1938309 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 1938368 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| || || ||||||||| ||| ||| Sbjct 1938369 ATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACT 1938428 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || || |||||||| || | ||||| | ||| ||||||||| Sbjct 1938429 TCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 104 bits (114), Expect = 3e-17 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | |||||||| | ||||||||||| || ||||| || | Sbjct 1938703 TTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCG 1938762 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || || | || ||||| ||||| |||||||| ||||| | |||||| || |||| Sbjct 1938763 AGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAG 1938822 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| ||||| || || || ||| | Sbjct 1938823 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 1938882 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| |||||||| || | ||||| | ||| ||||||||| Sbjct 1938883 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 >seq5499 Length=536236 Score = 105 bits (116), Expect = 1e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || ||||||||||||||||| || || ||||| || || | |||||||| || Sbjct 171319 AACACTAAATGTAAAGTAGATTCCTTCTGGATGTTATAGTCCGATAAAGTTCTGCCGTCT 171260 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || ||||| || |||||||| ||||||||||||||||| || ||||||||| Sbjct 171259 TCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGATCTGGCGGAATTCCT 171209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743472159749120