Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5320 113 4e-20 seq4085 82.4 6e-11 >seq5320 Length=807335 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || ||||| |||| ||| ||||||||||| ||||| || ||| ||| | Sbjct 503005 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCA 502946 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || ||||||||||||||||| ||||||| ||| || || ||||| | || |||||| Sbjct 502945 TCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTG 502886 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| |||||| ||||| | | | ||||| |||| || |||| || || Sbjct 502885 TCCTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATG 502826 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||| ||||| || || |||||||| Sbjct 502825 GTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| |||| || |||||||| |||||||| ||| ||| | || || Sbjct 502087 ACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCG 502028 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||||||||| ||||| | ||| || || || || | || |||||||| | Sbjct 502027 AGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGA 501968 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | |||| |||| || |||| || || ||||| Sbjct 501967 ATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTT 501908 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || || |||||||| Sbjct 501907 CCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| ||| || |||||||| |||||||| ||| |||| | || || Sbjct 501859 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 501800 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||| ||||| ||||| | ||| || || || || | || || ||||| | Sbjct 501799 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGA 501740 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| |||| || |||| || || ||||| Sbjct 501739 ATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTCTTT 501680 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || || || |||||||| Sbjct 501679 CCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || ||||| |||| |||| || || |||||||||||||| ||| ||| | Sbjct 502549 CTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCA 502490 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || |||||||||||||| ||||| | ||| || || || || | || |||||| Sbjct 502489 TCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTG 502430 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || |||||| ||||| | | | |||| |||| || |||| || || Sbjct 502429 TCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATG 502370 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || | || || || || |||||||| Sbjct 502369 GTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 >seq4085 Length=6844556 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 || || |||||||| || || ||| | || ||||| ||||| |||||||| || Sbjct 2742648 TTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 2742707 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | |||||||| || || || | |||||||||||| || || ||| || | | Sbjct 2742708 AGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 2742767 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | | || |||| ||||| | |||||| || || ||||| || || ||||| ||| Sbjct 2742768 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGAAG 2742827 Query 45329 ATTTGCATGTTGCCT 45343 || |||||| || || Sbjct 2742828 ATCTGCATGGTGGCT 2742842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395047099782556