Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5634 109 4e-19 seq5320 104 2e-17 >seq5634 Length=4821945 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| |||| ||||||||| |||||||||||||| ||||| || | Sbjct 1939160 TCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGA 1939219 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | ||| ||||| ||| | || || | || |||||| ||| Sbjct 1939220 GAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGG 1939279 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || ||||| ||||| ||| || | | ||| ||||| | ||| Sbjct 1939280 AATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGAC 1939339 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| |||| || || | || |||||||| || ||||| Sbjct 1939340 TTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| ||||| || ||||||||||| ||||| ||||| | Sbjct 1938704 TCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGA 1938763 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| || || || ||||| || ||| |||| | | ||| || || || Sbjct 1938764 GAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGG 1938823 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||| || || || | | || || || | | | | |||||| || || Sbjct 1938824 AATGCCTTCTTTGTCTTGGATCT-TAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 1938882 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| |||| ||||| | ||||| || || ||||||||| Sbjct 1938883 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | || || | ||||| || ||||| || || ||||||||||| | Sbjct 1939389 CCTCCACGTAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAA 1939448 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | |||||| || ||| |||| | | ||| ||||| || Sbjct 1939449 AGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 1939508 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || |||| | || ||||| | | | ||||||| | || Sbjct 1939509 ATACCTTCTTTGTCTTGGATTT-TAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCAC 1939567 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| |||| || || | ||||||||||| |||||||| Sbjct 1939568 CTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 >seq5320 Length=807335 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| || | || ||||| |||||||| |||||||| | Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAA 502274 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| | |||||| || || |||| | ||| || |||||| ||| Sbjct 502273 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 502214 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| |||||| | | | | ||||| | ||| | Sbjct 502213 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACT 502154 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || || |||||||| |||||||||||||| Sbjct 502153 TCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || ||||| | ||| |||| || | ||| |||||||| |||||||||||||| | Sbjct 501650 TCCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGA 501591 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||| | ||| || || || |||| | ||| || |||||| ||| Sbjct 501590 AAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGG 501531 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || ||||| | | | ||||| | ||| Sbjct 501530 GATTCCTTCTTTGTCTTGAATTT-TAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAA 501472 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || |||| ||||| || ||||| |||||| Sbjct 501471 CTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCATT 501422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||| |||||||| ||||| |||||||| | | ||| || |||| Sbjct 501862 AGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCT 501803 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || |||| | ||| || |||||| ||| | ||||| || || Sbjct 501802 TCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCT 501743 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | | | ||||| | ||| ||| | |||||| | Sbjct 501742 TGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTC 501683 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| ||||| || |||||||||||| Sbjct 501682 TTTCCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | |||||||| || ||||| ||||| || ||||||| | || Sbjct 503236 AGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGT 503177 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | || |||||||| | || |||||||||||||| || | |||||| Sbjct 503176 CCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCT 503117 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| ||| || | | | | ||||| | |||| || | || Sbjct 503116 TTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTA 503057 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| || || | ||||| |||||||| ||||| Sbjct 503056 ATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||||||||| | | ||| | |||||| | ||||| || Sbjct 502531 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCG 502472 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| | ||| || |||||| || | |||||||| || ||||| | || || Sbjct 502471 GCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTT-TGGCTTT 502413 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | | |||||| | ||| ||| | |||||| | || || || ||||| Sbjct 502412 AACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTTAATGT 502353 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| || ||||||||||| Sbjct 502352 TTTGACGAAAATTTGCAT 502335 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || | ||| || |||| ||||| || ||||| || ||||| ||||| || | Sbjct 501422 TCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGA 501363 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||| || || || ||| |||| | | || ||||| || Sbjct 501362 CAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGG 501303 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||||||| || | |||| || || | | | ||||||| | ||| Sbjct 501302 AATGCCTTCCTTATCCTGGATCT-TTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAA 501244 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || ||| | || || |||||||| || |||||||| ||||| Sbjct 501243 CTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379317018683820