Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5634 131 1e-25 seq5320 95.1 1e-14 seq4511 91.5 1e-13 >seq5634 Length=4821945 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||||| || || ||||| |||||| | || |||||| | || Sbjct 1939159 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 1939100 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | || ||||| |||||| | || || |||||| Sbjct 1939099 GACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 1939040 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| ||||||||||||||| || ||| | || |||||| Sbjct 1939039 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAAC 1938980 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || ||||| ||||| || Sbjct 1938979 ATCCAGAAAGAATCCACACTTCACCTGGTTCT 1938948 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| ||||| | || |||||| | || Sbjct 1938931 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCT 1938872 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | || ||||| |||||| | || || |||||| Sbjct 1938871 GACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 1938812 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| |||||||| || ||| || ||| | || |||||| Sbjct 1938811 CAACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGGACTATAAC 1938752 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||| || |||||| |||| || Sbjct 1938751 ATCCAAAAAGAATCTACCCTTCATTTGGTTCT 1938720 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || |||||||| || |||| || ||| | || Sbjct 1938475 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTCA 1938416 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || || | ||| |||||| ||||| | || || || || Sbjct 1938415 GATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 1938356 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| |||||||| ||||||| | ||| | ||||| ||| Sbjct 1938355 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 1938296 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 || ||||||||||| || || || Sbjct 1938295 ATCCAAAAAGAATCCACACTCCA 1938273 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || ||||||||||| || || ||||| |||||| |||| || ||| | || Sbjct 1939388 CATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 1939329 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || | ||| || || || || | || || || || Sbjct 1939328 GGACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCA 1939269 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| || | ||||| | ||| | ||||| || Sbjct 1939268 GCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAA 1939209 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||||||||| || ||||| |||| ||| Sbjct 1939208 TATTCAAAAAGAATCCACACTTCACTTGGTTCTT 1939175 >seq5320 Length=807335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| || || | || || ||| |||| Sbjct 502563 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATTACTCTGGAAGTCGAAGCGTCG 502622 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||||| | || || |||||| Sbjct 502623 GACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAG 502682 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| ||||| || ||||| | |||||| | || | || ||||| Sbjct 502683 CAGAGGTTAATCTTCGCCGGGAAACAACTTGAAGACGGTCGCACACTTTCTGACTATAAT 502742 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||| || | ||| |||| || Sbjct 502743 ATTCAAAAGGAATCTACCTTGCATTTGGTTCT 502774 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || | ||||| || || ||||| | || ||||| |||| Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || ||| | ||| ||||||||||| | || || || ||| Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || |||||| | ||||| || | || || ||| Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || | ||| |||| | || || | ||||||| Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGGCTTCGCGGCGGTA 502563 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||||| || || ||||| | || ||||| |||| Sbjct 502791 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 502850 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| |||||||||||| | || || || ||| Sbjct 502851 GACACGATCGAGAATGTTAAAGCCAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAG 502910 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||| | ||||| | || | ||||| || Sbjct 502911 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGTACACTTTCTGATTACAAT 502970 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || | ||| |||| | || || | ||||||| Sbjct 502971 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGCGGTA 503019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||||| || || ||||| | || ||||| |||| Sbjct 501879 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACAATCACGCTGGAAGTTGAGGCGTCA 501938 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || ||| | ||| ||||||||||| | || || || ||| Sbjct 501939 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 501998 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | | || ||||| || |||||| | ||||| Sbjct 501999 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGA 502033 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || |||||||| || || ||||| | || ||||| ||||| Sbjct 501651 ATGCAAATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCC 501710 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | ||| ||||| ||||| | || || || ||| Sbjct 501711 GACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 501770 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| | ||||| | || | || || || Sbjct 501771 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAAT 501830 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || | ||| |||| || Sbjct 501831 ATTCAGAAAGAATCCACATTGCATTTGGTTCT 501862 >seq4511 Length=1767931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||||| | | ||||| || || || || || || ||||| ||||||||||| ||||| Sbjct 466002 TGAGAAACACTTTATCTCTCATGTCTTAGCATTCTTTGCCGCTTCCGATGGTATCGTTAA 465943 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 |||||| || | || ||||| ||||| ||| || | | || || | || || || Sbjct 465942 TGAGAATCTGATTGAGAGATTCAGCCAAGAGGTGAAAATTCCCGAAGCACGTTGTTTCTA 465883 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||| | ||||| ||||| | ||||| || ||||| || | ||||| || || Sbjct 465882 TGGCTTTCAAATTGCCATAGAAAATATTCATTCTGAGATGTACTCTTTGCTCATTGAAAC 465823 Query 57848 GTA 57850 || Sbjct 465822 TTA 465820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733881341120