Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5665 158 1e-33 seq4511 84.2 2e-11 >seq5665 Length=3828390 Score = 158 bits (174), Expect = 1e-33 Identities = 204/280 (73%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 ||||| || || | | ||| | | |||||| ||| |||| ||||| || ||||| Sbjct 3267828 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAATAAATGCGGATTG 3267887 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 |||| ||| |||||||| ||||| | || |||||||||||| ||||| |||||| Sbjct 3267888 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 3267947 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 ||||| || ||||| | ||| ||||| | || || || || ||||| |||||||||| | Sbjct 3267948 ATGGATTCGTTATTCCCTAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 3268007 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 || |||||| | ||| || | ||| || || | || || ||||||||||||| Sbjct 3268008 AGCGAATTTCTTACTCCGTGCTTCGCAATCTTCGCCTTCAATTTATCCCAATCCCATAAA 3268067 Query 37315 TCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAAT 37352 | ||| || || | || ||||||||||||||| ||||| Sbjct 3268068 TTTGTCGGTTTAACGTT--CCACATATCATATTGGAGAAT 3268105 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| | ||| || |||| || || || |||||| | || || ||| ||||||||||| Sbjct 3269584 AGTACAGGCATTGAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATT 3269643 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 |||||||||||| || | ||| || ||| | |||||||| | || ||| ||||| | Sbjct 3269644 ATATGTTTCTATGACTTTATCAATCTCATTTTCATGAATACCAACAGCTACTCTCATCAA 3269703 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 ||||||||| || || || | ||| ||| ||| ||| || ||||| | | || | Sbjct 3269704 CATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGATAACTTCTCTCAAG 3269763 Query 38592 TGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 ||||| | |||| |||| |||| | |||| | ||||||| Sbjct 3269764 CGTTTTAAAACCAATATAATTATAATTAAAATCACGATCGTAT 3269806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 37377 ATATGTCTCATAAGGTCCGTAAATTTT---AGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433 ||||||||| |||| || | ||| ||||| ||||||||||| ||||| || | Sbjct 3268202 ATATGTCTCGTAAGTCCCCT---TTTCCGCAGCTAATTCGCAACTAGCTTCTAAGGCACC 3268258 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 |||||| | |||||||| |||| || || | | ||| ||||||| ||| ||||| | Sbjct 3268259 ATAATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCTTCTTTGCTCTCGAAGGG 3268318 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTA 37543 ||| | || ||| | ||| |||| || | ||| || | || ||||||| Sbjct 3268319 ATATCGCATTAACAGGAACGCATCGGCTAGACCTTGTATTCCTATACCTA 3268368 >seq4511 Length=1767931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 ||||| || |||||||||||||| || || |||||||| ||||||||||| ||||| || Sbjct 465841 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 465900 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | | || || ||||| || | ||||||||| || |||||||| | Sbjct 465901 GGAATTTTCACCTCTTGGCTGAATCTCTCAATCAGATTCTCATTAACGATACCATCGGAA 465960 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 | ||||| ||||||| | ||| ||||||| ||| || || Sbjct 465961 GCGGCAAAGAATGCTAAGACATGAGAGATAAAGTGTTTCTCATC 466004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468490621115840