Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5665 102 1e-16 seq5738 91.5 2e-13 >seq5665 Length=3828390 Score = 102 bits (112), Expect = 1e-16 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 65075 AAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 ||||| | || | |||| |||||| || || | ||| ||||| || || || | Sbjct 3267786 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 3267844 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||||| ||| ||||||| ||| | | ||||||||| || | ||||||||| Sbjct 3267845 CCATAGACCTCTACTGGTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCC 3267904 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 ||||||||| | || || ||||| || ||||||||||| | || || ||||| || Sbjct 3267905 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 3267964 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290 |||||||| || || || || || ||||||||||| Sbjct 3267965 TAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGC 3268000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 |||| | || ||||| || || | |||| | ||||| |||| || || ||||| | Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 66487 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545 | ||||| || ||| || || || ||| || || || || || || || || | Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATCTCATTT 3269674 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605 | |||||| || || || || | ||| ||||| || ||||| || || || ||||| Sbjct 3269675 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 3269734 Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665 || ||||||| || || | | || | ||||||||||||| ||| || || ||| Sbjct 3269735 TTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAA 3269794 Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 || || ||||| || ||| | || | ||||| || Sbjct 3269795 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 ||||||||| || || || ||||||||||||| || |||||| |||||| ||| Sbjct 3268926 GTATACAATTCTTTAAATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGA 3268985 Query 66030 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 ||||| | |||| ||| |||||| | || |||| |||||| ||||| || ||||| Sbjct 3268986 CACATTAGGCTCCACATCT-CGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCA 3269044 Query 66089 AAGAGCTATAAATAAATCTCT 66109 ||| | |||||||||||| Sbjct 3269045 TAGACCGTAAAATAAATCTCT 3269065 >seq5738 Length=4927432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||| | ||| ||||| | ||||||||||| |||| || |||||||| |||| Sbjct 2905061 CACTAAAAACTTTCTTTGTCTGCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 2905002 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | |||||||| |||||||| || | | | ||||| |||| ||||||| | |||| Sbjct 2905001 TTGCATAATCTGGATGTTGATTAATCATAATCGCTGCAGTTTCAGCTGCCAAGTTATCCA 2904942 Query 66919 ATTCTACCGTTGTTACTCCA 66938 |||| ||||| |||||| Sbjct 2904941 ATTCGCTTGTTGTCACTCCA 2904922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658124786294240